RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 GPR155Q7Z3F1 870 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 SLC16A11Q8NCK7 471 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 PNPT1Q8TCS8 783 aaKnown RBP20.52■□□□□ 0.88
SDC3-202ENST00000339394 HOXB13Q92826 284 aaPredicted RBP20.52■□□□□ 0.88
SDC3-202ENST00000339394 TP53INP1Q96A56 240 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 AGAP4Q96P64 663 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 BTBD9Q96Q07 612 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 CGREF1Q99674 301 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 NXF5Q9H1B4 397 aaKnown RBP20.52■□□□□ 0.88
SDC3-202ENST00000339394 EFCAB1Q9HAE3 211 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 TAGLN3Q9UI15 199 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 TEKT2Q9UIF3 430 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 FAF1Q9UNN5 650 aaPredicted RBP20.52■□□□□ 0.88
SDC3-202ENST00000339394 OR2J2O76002 312 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 NPPAP01160 153 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 SOX11P35716 441 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 PRIM2P49643 509 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 NR0B1P51843 470 aaKnown RBP20.51■□□□□ 0.87
SDC3-202ENST00000339394 MLF1P58340 268 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 DCAF7P61962 342 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 NNATQ16517 81 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 CRB2Q5IJ48 1285 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 NPSR1Q6W5P4 371 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 FBXO30Q8TB52 745 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 SLC9A6Q92581 669 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 JADE3Q92613 823 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 LCORQ96JN0 433 aaPredicted RBP20.51■□□□□ 0.87
SDC3-202ENST00000339394 LMF2Q9BU23 707 aaKnown RBP20.51■□□□□ 0.87
SDC3-202ENST00000339394 ACTRT3Q9BYD9 372 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 SERHL2Q9H4I8 314 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 STMN3Q9NZ72 180 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 CLIC1O00299 241 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 ITGA10O75578 1167 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 UNC5CO95185 931 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 CBX6O95503 412 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 KRT75O95678 551 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 DRD5P21918 477 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 MATN1P21941 496 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 MAP1BP46821 2468 aaKnown RBP20.51■□□□□ 0.87
SDC3-202ENST00000339394 CPA2P48052 419 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 ATMQ13315 3056 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 CAPRIN1Q14444 709 aaKnown RBP20.51■□□□□ 0.87
SDC3-202ENST00000339394 ZNHIT3Q15649 155 aaPredicted RBP20.51■□□□□ 0.87
SDC3-202ENST00000339394 MEP1AQ16819 746 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 EXOSC6Q5RKV6 272 aaKnown RBP20.51■□□□□ 0.87
SDC3-202ENST00000339394 RNF130Q86XS8 419 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 LRRC58Q96CX6 371 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 OTUB1Q96FW1 271 aaPredicted RBP20.51■□□□□ 0.87
SDC3-202ENST00000339394 SLC35G5Q96KT7 338 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 ZNF354BQ96LW1 612 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 SLC39A3Q9BRY0 314 aa20.51■□□□□ 0.87
SDC3-202ENST00000339394 NIPSNAP3AQ9UFN0 247 aaPredicted RBP20.51■□□□□ 0.87
SDC3-202ENST00000339394 FRG2CA6NGY1 282 aa20.5■□□□□ 0.87
SDC3-202ENST00000339394 FXYD1O00168 92 aa20.5■□□□□ 0.87
SDC3-202ENST00000339394 ZNF354AO60765 605 aaPredicted RBP20.5■□□□□ 0.87
SDC3-202ENST00000339394 ACP2P11117 423 aa20.5■□□□□ 0.87
SDC3-202ENST00000339394 MAN2A2P49641 1150 aa20.5■□□□□ 0.87
SDC3-202ENST00000339394 MVDP53602 400 aa20.5■□□□□ 0.87
SDC3-202ENST00000339394 RUNDC3AQ59EK9 446 aa20.5■□□□□ 0.87
SDC3-202ENST00000339394 PIGGQ5H8A4 983 aa20.5■□□□□ 0.87
SDC3-202ENST00000339394 CDC73Q6P1J9 531 aa20.5■□□□□ 0.87
SDC3-202ENST00000339394 SLC44A2Q8IWA5 706 aaPredicted RBP20.5■□□□□ 0.87
SDC3-202ENST00000339394 LGI4Q8N135 537 aa20.5■□□□□ 0.87
SDC3-202ENST00000339394 OR5D16Q8NGK9 328 aa20.5■□□□□ 0.87
SDC3-202ENST00000339394 MIPOL1Q8TD10 442 aa20.5■□□□□ 0.87
SDC3-202ENST00000339394 ANKRD27Q96NW4 1050 aa20.5■□□□□ 0.87
SDC3-202ENST00000339394 GID8Q9NWU2 228 aa20.5■□□□□ 0.87
SDC3-202ENST00000339394 YARS2Q9Y2Z4 477 aaKnown RBP20.5■□□□□ 0.87
SDC3-202ENST00000339394 NUP214P35658 2090 aaPredicted RBP20.49■□□□□ 0.87
SDC3-202ENST00000339394 MED13Q9UHV7 2174 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 CCT8L1PA6NM43 557 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 NKX2-2O95096 273 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 GABRA3P34903 492 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 NUDT2P50583 147 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 POLE2P56282 527 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 ART3Q13508 389 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 DUSP5Q16690 384 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 COL28A1Q2UY09 1125 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 COX20Q5RI15 118 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 ABHD17BQ5VST6 288 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 ISLR2Q6UXK2 745 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 LINC00696Q6ZRV3 163 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 OR4N2Q8NGD1 307 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 GPR151Q8TDV0 419 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 ADAMTS15Q8TE58 950 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 NSL1Q96IY1 281 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 RASL10BQ96S79 203 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 TRIM8Q9BZR9 551 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 IKZF5Q9H5V7 419 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 GMEB1Q9Y692 573 aa20.49■□□□□ 0.87
SDC3-202ENST00000339394 TTC36A6NLP5 189 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 NADKO95544 446 aaPredicted RBP20.48■□□□□ 0.87
SDC3-202ENST00000339394 KRT16P08779 473 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 ALOX5P09917 674 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 T-ENOLP0DO92 83 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 ESRRAP11474 423 aaPredicted RBP20.48■□□□□ 0.87
SDC3-202ENST00000339394 ST13P50502 369 aaKnown RBP20.48■□□□□ 0.87
SDC3-202ENST00000339394 DDX59Q5T1V6 619 aaKnown RBP eCLIP20.48■□□□□ 0.87
SDC3-202ENST00000339394 TNFAIP8L2Q6P589 184 aaPredicted RBP20.48■□□□□ 0.87
SDC3-202ENST00000339394 TAGAPQ8N103 731 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms