RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 PPICP45877 212 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 SLC18A1P54219 525 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 NRG3P56975 720 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 PPIAP62937 165 aaKnown RBP14.54□□□□□ -0.08
CLN3-201ENST00000333496 BST1Q10588 318 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 ATP6AP1LQ52LC2 224 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 CT45A2Q5DJT8 189 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 HHATQ5VTY9 493 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 BICRALQ6AI39 1079 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 Q6ZPB1 254 aaPredicted RBP14.54□□□□□ -0.08
CLN3-201ENST00000333496 GK5Q6ZS86 529 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 SPPL2CQ8IUH8 684 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 CIDECQ96AQ7 238 aaPredicted RBP14.54□□□□□ -0.08
CLN3-201ENST00000333496 HSPBAP1Q96EW2 488 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 VSTM2LQ96N03 204 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 ZDHHC11Q9H8X9 412 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 NKIRAS1Q9NYS0 192 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 CNIH4Q9P003 139 aa14.54□□□□□ -0.08
CLN3-201ENST00000333496 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.54□□□□□ -0.08
CLN3-201ENST00000333496 A0A087WV62 115 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 TRGV8A0A0C4DH27 118 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 FAM166BA8MTA8 275 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 PLOD2O00469 737 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 ABCB1P08183 1280 aaPredicted RBP14.53□□□□□ -0.08
CLN3-201ENST00000333496 NTSP30990 170 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 FRKP42685 505 aaPredicted RBP14.53□□□□□ -0.08
CLN3-201ENST00000333496 CA7P43166 264 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 DCAF7P61962 342 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 PLGLB1Q02325 96 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 RBPJQ06330 500 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 STX3Q13277 289 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 PDCD2Q16342 344 aaPredicted RBP14.53□□□□□ -0.08
CLN3-201ENST00000333496 C3AR1Q16581 482 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 HYAL4Q2M3T9 481 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 TMEM107Q6UX40 140 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 NPSR1Q6W5P4 371 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 ZNF551Q7Z340 670 aaPredicted RBP14.53□□□□□ -0.08
CLN3-201ENST00000333496 LIX1Q8N485 282 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 TMEM251Q8N6I4 163 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 SPPL2AQ8TCT8 520 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 NTNG2Q96CW9 530 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 OMA1Q96E52 524 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 ELP4Q96EB1 424 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 BTBD9Q96Q07 612 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 C1orf50Q9BV19 199 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 DEFB127Q9H1M4 99 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 RABEP2Q9H5N1 569 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 IL1RL2Q9HB29 575 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 FOLH1BQ9HBA9 442 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 C19orf53Q9UNZ5 99 aaPredicted RBP14.53□□□□□ -0.08
CLN3-201ENST00000333496 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.53□□□□□ -0.08
CLN3-201ENST00000333496 SETXQ7Z333 2677 aaKnown RBP14.53□□□□□ -0.08
CLN3-201ENST00000333496 SPTBN1Q01082 2364 aaKnown RBP14.53□□□□□ -0.08
CLN3-201ENST00000333496 HECTD1Q9ULT8 2610 aa14.53□□□□□ -0.08
CLN3-201ENST00000333496 PCNX3Q9H6A9 2034 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 A0A1B0GTH9 108 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 A0A1B0GUH1 482 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 ANKRD33BA6NCL7 494 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 FRG2CA6NGY1 282 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 CAPN14A8MX76 684 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 UPK1AO00322 258 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 TO15178 435 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 ACOX3O15254 700 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 PDPK1O15530 556 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 CDC40O60508 579 aaKnown RBP eCLIP14.52□□□□□ -0.08
CLN3-201ENST00000333496 ERN1O75460 977 aaKnown RBP14.52□□□□□ -0.08
CLN3-201ENST00000333496 PPM1BO75688 479 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 PDE9AO76083 593 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 PSMG1O95456 288 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 RFPL3SP0C7P2 107 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 NAGAP17050 411 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 MAGEA5P43359 124 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 ASMTP46597 345 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 TMED10P49755 219 aaKnown RBP14.52□□□□□ -0.08
CLN3-201ENST00000333496 RPL14P50914 215 aaKnown RBP14.52□□□□□ -0.08
CLN3-201ENST00000333496 PSG6Q00889 435 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 PTGR1Q14914 329 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.52□□□□□ -0.08
CLN3-201ENST00000333496 IL23RQ5VWK5 629 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 SLC22A16Q86VW1 577 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 FNDC5Q8NAU1 212 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 MGARPQ8TDB4 240 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 NUDT8Q8WV74 236 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 DIO2Q92813 273 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 HGDQ93099 445 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 PPCDCQ96CD2 204 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 TUBGCP3Q96CW5 907 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 PPP1R36Q96LQ0 422 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 PNPOQ9NVS9 261 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 SH3BP4Q9P0V3 963 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 SH3BGRL2Q9UJC5 107 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 TINAGQ9UJW2 476 aa14.52□□□□□ -0.08
CLN3-201ENST00000333496 PHF3Q92576 2039 aaKnown RBP14.52□□□□□ -0.09
CLN3-201ENST00000333496 SPTAN1Q13813 2472 aaKnown RBP14.52□□□□□ -0.09
CLN3-201ENST00000333496 LRRC3CA6NJW4 275 aa14.52□□□□□ -0.09
CLN3-201ENST00000333496 ACOT7O00154 380 aa14.52□□□□□ -0.09
CLN3-201ENST00000333496 TP53I11O14683 189 aa14.52□□□□□ -0.09
CLN3-201ENST00000333496 SLITRK5O94991 958 aa14.52□□□□□ -0.09
CLN3-201ENST00000333496 SNUPNO95149 360 aaKnown RBP14.52□□□□□ -0.09
CLN3-201ENST00000333496 CELA3AP09093 270 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms