RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 FABP2P12104 132 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 CD40P25942 277 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 MGAT1P26572 445 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 RPS18P62269 152 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 RAB11AP62491 216 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 CT45A2Q5DJT8 189 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 CT45A1Q5HYN5 189 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 RESP18Q5W5W9 173 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 DUPD1Q68J44 220 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 ENPP6Q6UWR7 440 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 C3P1Q6ZMU1 363 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF813Q6ZN06 617 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 OVCH1Q7RTY7 1134 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC43A3Q8NBI5 491 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 CT45A3Q8NHU0 189 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 EDEM1Q92611 657 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 TBCBQ99426 244 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 TMEM175Q9BSA9 504 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC12A9Q9BXP2 914 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 ITPAQ9BY32 194 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 MRPL4Q9BYD3 311 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 RGS11O94810 467 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 APBB3O95704 486 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 KCNA6P17658 529 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 CCKBRP32239 447 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 PRCPP42785 496 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 BCL2L1Q07817 233 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 ATAT1Q5SQI0 421 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 DHRS7BQ6IAN0 325 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 RETREG3Q86VR2 466 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 DTWD1Q8N5C7 304 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 FLAD1Q8NFF5 587 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 PHYHIPLQ96FC7 376 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 C1orf74Q96LT6 269 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 SYNPO2LQ9H987 977 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 S100A14Q9HCY8 104 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 SSU72Q9NP77 194 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 AGO1Q9UL18 857 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 MYO5CQ9NQX4 1742 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 MYOM2P54296 1465 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF804BA4D1E1 1349 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 LOC107984156A0A0G2JMH3 177 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 A0A1W2PQ27 194 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 A0A1W2PQ64 194 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 A0A1W2PQD8 194 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 A0A1W2PQJ5 194 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 GABRR3A8MPY1 467 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 IRF6O14896 467 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 RGS13O14921 159 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 HLA-HP01893 362 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 IFNW1P05000 195 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 C8BP07358 591 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 BDKRB1P46663 353 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 POU3F4P49335 361 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 C19orf57Q0VDD7 668 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 FABP9Q0Z7S8 132 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 LSAMPQ13449 338 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 GRM2Q14416 872 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 SF3A2Q15428 464 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 LRRC73Q5JTD7 316 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 UNC5AQ6ZN44 842 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ARL17AQ8IVW1 177 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 OR4B1Q8NGF8 309 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 PGM2Q96G03 612 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 SMOQ99835 787 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 DOHHQ9BU89 302 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 CADM1Q9BY67 442 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 METTL7AQ9H8H3 244 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ERVMER34-1Q9H9K5 563 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 CYB5R1Q9UHQ9 305 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 OR51B4Q9Y5P0 310 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 A0A087X1B8 175 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 MROH6A6NGR9 719 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 GADD45GO95257 159 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 GIPRP48546 466 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 TPPP2P59282 170 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 CKS1BP61024 79 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 SPEM2Q0P670 501 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 IL24Q13007 206 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 SQSTM1Q13501 440 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 CAPSQ13938 189 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 PCBP2Q15366 365 aaKnown RBP eCLIP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 FNDC3BQ53EP0 1204 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 PRAMEF19Q5SWL8 479 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 KDF1Q8NAX2 398 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 OR52B2Q96RD2 323 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 CTDSP1Q9GZU7 261 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 MFSD1Q9H3U5 465 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 FAM206AQ9NX38 181 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 TBL2Q9Y4P3 447 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 IQGAP2Q13576 1575 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF587BE7ETH6 402 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC22A5O76082 557 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 MGPP08493 103 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 EDN3P14138 238 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 FOLR1P15328 257 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF44P15621 663 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 TYRP1P17643 537 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 CPT2P23786 658 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 BCAT1P54687 386 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms