RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 OR8J1Q8NGP2 316 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 DOK4Q8TEW6 326 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 KLHL6Q8WZ60 621 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 MRPL38Q96DV4 380 aaKnown RBP18.84■□□□□ 0.61
VPS53-201ENST00000291074 BMFQ96LC9 184 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 ZNF232Q9UNY5 417 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 CHST2Q9Y4C5 530 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 RASGRP1O95267 797 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 CDH3P22223 829 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 NFATC4Q14934 902 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 PRRT3Q5FWE3 981 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 KIAA1324Q6UXG2 1013 aaKnown RBP18.84■□□□□ 0.61
VPS53-201ENST00000291074 ASPGQ86U10 573 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 KIF18BQ86Y91 864 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 AMER2Q8N7J2 671 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 GIMAP5Q96F15 307 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 PINK1Q9BXM7 581 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 EGLN3Q9H6Z9 239 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 NTNG1Q9Y2I2 539 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 LSM2Q9Y333 95 aaKnown RBP18.84■□□□□ 0.61
VPS53-201ENST00000291074 KNL1Q8NG31 2342 aa18.83■□□□□ 0.61
VPS53-201ENST00000291074 KRBA1A5PL33 1030 aa18.83■□□□□ 0.61
VPS53-201ENST00000291074 CPSF4LA6NMK7 179 aaKnown RBP18.83■□□□□ 0.61
VPS53-201ENST00000291074 CCRL2O00421 344 aa18.83■□□□□ 0.61
VPS53-201ENST00000291074 FCMRO60667 390 aa18.83■□□□□ 0.61
VPS53-201ENST00000291074 CSO75390 466 aaKnown RBP18.83■□□□□ 0.61
VPS53-201ENST00000291074 RELAQ04206 551 aa18.83■□□□□ 0.61
VPS53-201ENST00000291074 MFSD4BQ5TF39 518 aa18.83■□□□□ 0.61
VPS53-201ENST00000291074 FBXO42Q6P3S6 717 aa18.83■□□□□ 0.61
VPS53-201ENST00000291074 GAL3ST3Q96A11 431 aa18.83■□□□□ 0.61
VPS53-201ENST00000291074 C10orf90Q96M02 699 aa18.83■□□□□ 0.61
VPS53-201ENST00000291074 HHATLQ9HCP6 504 aa18.83■□□□□ 0.61
VPS53-201ENST00000291074 KLK4Q9Y5K2 254 aa18.83■□□□□ 0.61
VPS53-201ENST00000291074 A0A087WUU8 490 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 CTSVO60911 334 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 GPX5O75715 221 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 PPP5CP53041 499 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 TAS2R41P59536 307 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 KIAA1024LP59773 190 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 OR7G2Q8NG99 324 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 OR10G6Q8NH81 332 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 FLVCR1-AS1Q8TAF5 88 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 MOAP1Q96BY2 351 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 TMEM80Q96HE8 168 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 WDR92Q96MX6 357 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 TAPBPLQ9BX59 468 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 C3orf14Q9HBI5 128 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 QPCTLQ9NXS2 382 aa18.83■□□□□ 0.6
VPS53-201ENST00000291074 AGAP5A6NIR3 686 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 CASC3O15234 703 aaKnown RBP18.82■□□□□ 0.6
VPS53-201ENST00000291074 KDM1AO60341 852 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 ALPPP05187 535 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 TGM1P22735 817 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 CSTF2P33240 577 aaKnown RBP eCLIP18.82■□□□□ 0.6
VPS53-201ENST00000291074 AVPR1BP47901 424 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 PDX1P52945 283 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 GNA13Q14344 377 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 CEBPEQ15744 281 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 DEFB134Q4QY38 66 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 C1orf94Q6P1W5 598 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 C19orf48Q6RUI8 117 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 C16orf62Q7Z3J2 963 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 MRGPRX1Q96LB2 322 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 NEURL2Q9BR09 285 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 S1PR5Q9H228 398 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 ANKHQ9HCJ1 492 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 ABCB10Q9NRK6 738 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 SEMA4GQ9NTN9 838 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 APOL3O95236 402 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 TSFMP43897 325 aaKnown RBP18.82■□□□□ 0.6
VPS53-201ENST00000291074 GIPRP48546 466 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 PCYT1AP49585 367 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 RPS15AP62244 130 aaKnown RBP18.82■□□□□ 0.6
VPS53-201ENST00000291074 SIM1P81133 766 aaPredicted RBP18.82■□□□□ 0.6
VPS53-201ENST00000291074 MLLT1Q03111 559 aaPredicted RBP18.82■□□□□ 0.6
VPS53-201ENST00000291074 TGM3Q08188 693 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 MAP4K2Q12851 820 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 SLC16A11Q8NCK7 471 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 SLC35A4Q96G79 324 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 NXF2Q9GZY0 626 aaKnown RBP18.82■□□□□ 0.6
VPS53-201ENST00000291074 SLC28A3Q9HAS3 691 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 LYARQ9NX58 379 aaKnown RBP18.82■□□□□ 0.6
VPS53-201ENST00000291074 CNIH4Q9P003 139 aa18.82■□□□□ 0.6
VPS53-201ENST00000291074 ZNF860A6NHJ4 632 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 WWP2O00308 870 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 POLR2CP19387 275 aaPredicted RBP18.81■□□□□ 0.6
VPS53-201ENST00000291074 TRHRP34981 398 aaPredicted RBP18.81■□□□□ 0.6
VPS53-201ENST00000291074 ARFIP1P53367 373 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 ALDH6A1Q02252 535 aaKnown RBP18.81■□□□□ 0.6
VPS53-201ENST00000291074 RGS1Q08116 209 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 INAVAQ3KP66 663 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 SYT14P1Q58G82 188 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 TMEFF1Q8IYR6 380 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 PATE1Q8WXA2 126 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 LRR1Q96L50 414 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 CCDC59Q9P031 241 aaKnown RBP18.81■□□□□ 0.6
VPS53-201ENST00000291074 MKLN1Q9UL63 735 aa18.81■□□□□ 0.6
VPS53-201ENST00000291074 RPL36Q9Y3U8 105 aaKnown RBP18.81■□□□□ 0.6
VPS53-201ENST00000291074 HBQ1P09105 142 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms