RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 DDOQ99489 341 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 SPATA6Q9NWH7 488 aaPredicted RBP13.56□□□□□ -0.24
SDC1-201ENST00000254351 GULP1Q9UBP9 304 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 CACNG2Q9Y698 323 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 KDM4BO94953 1096 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 ALDOBP05062 364 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 URODP06132 367 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 HOXD4P09016 255 aaPredicted RBP13.56□□□□□ -0.24
SDC1-201ENST00000254351 IL32P24001 234 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 CTSOP43234 321 aaPredicted RBP13.56□□□□□ -0.24
SDC1-201ENST00000254351 ASMTP46597 345 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 ACLYP53396 1101 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 MANFP55145 182 aaKnown RBP13.56□□□□□ -0.24
SDC1-201ENST00000254351 RPS7P62081 194 aaKnown RBP13.56□□□□□ -0.24
SDC1-201ENST00000254351 ST3GAL2Q16842 350 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 GPR139Q6DWJ6 353 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 BOLLQ8N9W6 283 aaKnown RBP13.56□□□□□ -0.24
SDC1-201ENST00000254351 DBF4BQ8NFT6 615 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 OR51G2Q8NGK0 314 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 GANCQ8TET4 914 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 CLP1Q92989 425 aaKnown RBP13.56□□□□□ -0.24
SDC1-201ENST00000254351 METTL2AQ96IZ6 378 aaKnown RBP13.56□□□□□ -0.24
SDC1-201ENST00000254351 FERD3LQ96RJ6 166 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 SLC22A12Q96S37 553 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 CACNG6Q9BXT2 260 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 ZDHHC6Q9H6R6 413 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 ZDHHC3Q9NYG2 299 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 CXXC1Q9P0U4 656 aaPredicted RBP13.56□□□□□ -0.24
SDC1-201ENST00000254351 CFAP97Q9P2B7 532 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 A0A1W2PRG6 482 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 SLC38A8A6NNN8 435 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 RNASET2O00584 256 aaKnown RBP13.55□□□□□ -0.24
SDC1-201ENST00000254351 LGI1O95970 557 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 HPXP02790 462 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 PUDPQ08623 228 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 ZNF763Q0D2J5 394 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 PLD1Q13393 1074 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 SLBPQ14493 270 aaKnown RBP eCLIP13.55□□□□□ -0.24
SDC1-201ENST00000254351 RTP2Q5QGT7 225 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 ADGRF1Q5T601 910 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 ARL9Q6T311 187 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 ADGRF3Q8IZF5 1079 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 OR6M1Q8NGM8 313 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 RANBP3Q9H6Z4 567 aaPredicted RBP13.55□□□□□ -0.24
SDC1-201ENST00000254351 FOLH1BQ9HBA9 442 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 FZD3Q9NPG1 666 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 PITPNM1O00562 1244 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 TCRBP04435 133 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 CTGFP29279 349 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 CDH11P55287 796 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 STXBP1P61764 594 aaKnown RBP13.55□□□□□ -0.24
SDC1-201ENST00000254351 RING1Q06587 406 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 SLC3A1Q07837 685 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 IRF5Q13568 498 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 MRPL58Q14197 206 aaKnown RBP13.55□□□□□ -0.24
SDC1-201ENST00000254351 GRIN2CQ14957 1233 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 GGTA1PQ4G0N0 100 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 GET4Q7L5D6 327 aaPredicted RBP13.55□□□□□ -0.24
SDC1-201ENST00000254351 STPG2Q8N412 459 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 LSM14AQ8ND56 463 aaKnown RBP13.55□□□□□ -0.24
SDC1-201ENST00000254351 ORAI3Q9BRQ5 295 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 MED20Q9H944 212 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 ARID1BQ8NFD5 2236 aaPredicted RBP13.55□□□□□ -0.24
SDC1-201ENST00000254351 GLOD5A6NK44 160 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 DPM1O60762 260 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 OAZ2O95190 189 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 GABRA5P31644 462 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 HMGA2P52926 109 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 SMAD3P84022 425 aaKnown RBP13.55□□□□□ -0.24
SDC1-201ENST00000254351 DGCR2P98153 550 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 ZNF630Q2M218 657 aaPredicted RBP13.55□□□□□ -0.24
SDC1-201ENST00000254351 CLLU1OSQ5K130 101 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 C12orf73Q69YU5 71 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 FAAP20Q6NZ36 180 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 MZT2AQ6P582 158 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 TMEM173Q86WV6 379 aaPredicted RBP13.55□□□□□ -0.24
SDC1-201ENST00000254351 SIAH3Q8IW03 269 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 TOMM5Q8N4H5 51 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 OR8K5Q8NH50 307 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 NXPE2Q96DL1 559 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 FUBP3Q96I24 572 aaKnown RBP eCLIP13.55□□□□□ -0.24
SDC1-201ENST00000254351 KCNJ15Q99712 375 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 PLAGL1Q9UM63 463 aa13.55□□□□□ -0.24
SDC1-201ENST00000254351 PRMT3O60678 531 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 PPM1BO75688 479 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 SERPIND1P05546 499 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 C8GP07360 202 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 MRPL3P09001 348 aaKnown RBP13.54□□□□□ -0.24
SDC1-201ENST00000254351 HNMTP50135 292 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 PTSQ03393 145 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 PCDH1Q08174 1060 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 RPTNQ6XPR3 784 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 LHFPL5Q8TAF8 219 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 C16orf78Q8WTQ4 265 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 FAM46AQ96IP4 442 aaKnown RBP13.54□□□□□ -0.24
SDC1-201ENST00000254351 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.54□□□□□ -0.24
SDC1-201ENST00000254351 PPA2Q9H2U2 334 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 TDP1Q9NUW8 608 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 TAS2R7Q9NYW3 318 aa13.54□□□□□ -0.24
SDC1-201ENST00000254351 KCMF1Q9P0J7 381 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms