RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 U3KQV3 271 aa15.76■□□□□ 0.11
CLN3-252ENST00000636907 A0A1B0GX78 115 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 DUXAA6NLW8 204 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 DLGAP1O14490 977 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 E2F6O75461 281 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 H6PDO95479 791 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 CBX7O95931 251 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 RECKO95980 971 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 FBLP22087 321 aaKnown RBP15.75■□□□□ 0.11
CLN3-252ENST00000636907 DCTP40126 519 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 GRK6P43250 576 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 MAPK10P53779 464 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 MAP4K2Q12851 820 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 DSG2Q14126 1118 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 DUSP5Q16690 384 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 CLPPQ16740 277 aaPredicted RBP15.75■□□□□ 0.11
CLN3-252ENST00000636907 EXOSC6Q5RKV6 272 aaKnown RBP15.75■□□□□ 0.11
CLN3-252ENST00000636907 C1orf189Q5VU69 101 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 HEPHL1Q6MZM0 1159 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 ZDHHC13Q8IUH4 622 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 SLITRK4Q8IW52 837 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 GALNT12Q8IXK2 581 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 VWA5B2Q8N398 1253 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 SVOPLQ8N434 492 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 GPR32P1Q8NGA4 272 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 OR5K1Q8NHB7 308 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 MAGEE2Q8TD90 523 aaPredicted RBP15.75■□□□□ 0.11
CLN3-252ENST00000636907 GEMIN6Q8WXD5 167 aaKnown RBP15.75■□□□□ 0.11
CLN3-252ENST00000636907 CDS1Q92903 461 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 RIT1Q92963 219 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 RNF31Q96EP0 1072 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 RBM18Q96H35 190 aaKnown RBP15.75■□□□□ 0.11
CLN3-252ENST00000636907 OR6C1Q96RD1 312 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 ZNF304Q9HCX3 659 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 NECTIN3Q9NQS3 549 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 NDUFAF4Q9P032 175 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 LIPT1Q9Y234 373 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 PCDHGB2Q9Y5G2 931 aa15.75■□□□□ 0.11
CLN3-252ENST00000636907 A0A0G2JPF8 293 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 HNRNPCL2B2RXH8 293 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 HNRNPCL3B7ZW38 293 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 D6RAR5 112 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 NTN3O00634 580 aaPredicted RBP15.74■□□□□ 0.11
CLN3-252ENST00000636907 DENRO43583 198 aaKnown RBP15.74■□□□□ 0.11
CLN3-252ENST00000636907 SERPINB7O75635 380 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 FESP07332 822 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 HNRNPCL4P0DMR1 293 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 S1PR1P21453 382 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 STT3AP46977 705 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 DUSP8Q13202 625 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 MED21Q13503 144 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 PHF19Q5T6S3 580 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 ATAD3BQ5T9A4 648 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 PRAMEF8Q5VWM4 474 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 PRAMEF7Q5VXH5 474 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 C16orf62Q7Z3J2 963 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 KRT73Q86Y46 540 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 SDCCAG3Q96C92 435 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 DGAT2Q96PD7 388 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 TRNT1Q96Q11 434 aaKnown RBP15.74■□□□□ 0.11
CLN3-252ENST00000636907 OR1F2PQ96R84 312 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 OSBPL11Q9BXB4 747 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 THSD1Q9NS62 852 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 EXD2Q9NVH0 621 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 SEC14L3Q9UDX4 400 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 SH3GLB1Q9Y371 365 aa15.74■□□□□ 0.11
CLN3-252ENST00000636907 LDOC1O95751 146 aaPredicted RBP15.73■□□□□ 0.11
CLN3-252ENST00000636907 AGR2O95994 175 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 ETS2P15036 469 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 KCNJ5P48544 419 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 PDX1P52945 283 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 CHRNEQ04844 493 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 DAG1Q14118 895 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 PUM1Q14671 1186 aaKnown RBP eCLIP15.73■□□□□ 0.11
CLN3-252ENST00000636907 NHSL2Q5HYW2 709 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 ARHGAP40Q5TG30 622 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 SHQ1Q6PI26 577 aaKnown RBP15.73■□□□□ 0.11
CLN3-252ENST00000636907 MED25Q71SY5 747 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 HMGN2P46Q86SG4 172 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 OR52R1Q8NGF1 315 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 RHBDD1Q8TEB9 315 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 APOBEC4Q8WW27 367 aaKnown RBP15.73■□□□□ 0.11
CLN3-252ENST00000636907 ATOH1Q92858 354 aaPredicted RBP15.73■□□□□ 0.11
CLN3-252ENST00000636907 ZNF300Q96RE9 604 aaPredicted RBP15.73■□□□□ 0.11
CLN3-252ENST00000636907 BTBD2Q9BX70 525 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 AMBRA1Q9C0C7 1298 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 SLC38A1Q9H2H9 487 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 Q9H521 79 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 SIDT1Q9NXL6 827 aaKnown RBP15.73■□□□□ 0.11
CLN3-252ENST00000636907 SRPK3Q9UPE1 567 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 FRYLO94915 3013 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 A8MVJ9 347 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 HRKO00198 91 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 DPM1O60762 260 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 TIAF1O95411 115 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 ALOX5P09917 674 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 ALDH3A2P51648 485 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 RHBDD2Q6NTF9 364 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 ZCCHC12Q6PEW1 402 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 CDRT4Q8N9R6 151 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms