RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 TMEM200CA6NKL6 621 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 E9PBE3 544 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 CDK2AP1O14519 115 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 UBDO15205 165 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 TROVE2P10155 538 aaKnown RBP eCLIP16.73■□□□□ 0.27
CLN3-239ENST00000628023 S1PR1P21453 382 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 CD96P40200 585 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 HLCSP50747 726 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 NR0B1P51843 470 aaKnown RBP16.73■□□□□ 0.27
CLN3-239ENST00000628023 STX1BP61266 288 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 MPEG1Q2M385 716 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 EIF2S3LQ2VIR3 472 aaKnown RBP16.73■□□□□ 0.27
CLN3-239ENST00000628023 PLEKHN1Q494U1 663 aaPredicted RBP16.73■□□□□ 0.27
CLN3-239ENST00000628023 PRR30Q53SZ7 412 aaPredicted RBP16.73■□□□□ 0.27
CLN3-239ENST00000628023 TMEM198Q66K66 360 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 RIMKLAQ8IXN7 391 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 TAGAPQ8N103 731 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 CYP4Z2PQ8N1L4 340 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 TMEM125Q96AQ2 219 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 EBF4Q9BQW3 602 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 ITPAQ9BY32 194 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 DCTN4Q9UJW0 460 aa16.73■□□□□ 0.27
CLN3-239ENST00000628023 A0A087WV62 115 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 A0A1W2PRB8 838 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 PLOD2O00469 737 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 CFLARO15519 480 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 PLOD3O60568 738 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 CD46P15529 392 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 GPX3P22352 226 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 TRHRP34981 398 aaPredicted RBP16.72■□□□□ 0.27
CLN3-239ENST00000628023 SOX3P41225 446 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 FRKP42685 505 aaPredicted RBP16.72■□□□□ 0.27
CLN3-239ENST00000628023 KIR3DL1P43629 444 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 NRG3P56975 720 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 UFM1P61960 85 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 SRSF11Q05519 484 aaKnown RBP16.72■□□□□ 0.27
CLN3-239ENST00000628023 DUSP8Q13202 625 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 ELOAQ14241 798 aaKnown RBP16.72■□□□□ 0.27
CLN3-239ENST00000628023 NNATQ16517 81 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 GSTA3Q16772 222 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 DPY19L1Q2PZI1 675 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 ZNF468Q5VIY5 522 aaPredicted RBP16.72■□□□□ 0.27
CLN3-239ENST00000628023 SPINK14Q6IE38 97 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 OPN5Q6U736 354 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 GPALPP1Q8IXQ4 340 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 SIMC1Q8NDZ2 872 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 NUDT8Q8WV74 236 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 COQ8BQ96D53 544 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 SIGLEC12Q96PQ1 595 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 SIKE1Q9BRV8 207 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 CCDC28BQ9BUN5 200 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 KLHL1Q9NR64 748 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 FGFR1OP2Q9NVK5 253 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 TAS2R9Q9NYW1 312 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 DTX4Q9Y2E6 619 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 SNX8Q9Y5X2 465 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 GPR45Q9Y5Y3 372 aa16.72■□□□□ 0.27
CLN3-239ENST00000628023 UTP20O75691 2785 aaKnown RBP16.72■□□□□ 0.27
CLN3-239ENST00000628023 A0A0G2JND7 137 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 ANKRD28O15084 1053 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 SEMA7AO75326 666 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 SLC25A12O75746 678 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 OR6B1O95007 311 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 C6orf47O95873 294 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 ABCB1P08183 1280 aaPredicted RBP16.71■□□□□ 0.27
CLN3-239ENST00000628023 CDK9P50750 372 aaKnown RBP16.71■□□□□ 0.27
CLN3-239ENST00000628023 MRPL49Q13405 166 aaKnown RBP16.71■□□□□ 0.27
CLN3-239ENST00000628023 SPDYE7PQ495Y7 208 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 PDCD4Q53EL6 469 aaKnown RBP16.71■□□□□ 0.27
CLN3-239ENST00000628023 PIGGQ5H8A4 983 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 ZNF766Q5HY98 468 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 OR4F3Q6IEY1 312 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 IL20RBQ6UXL0 311 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 CAMKMTQ7Z624 323 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 MIER2Q8N344 545 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 CISD2Q8N5K1 135 aaKnown RBP16.71■□□□□ 0.27
CLN3-239ENST00000628023 RFWD2Q8NHY2 731 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 TP53INP1Q96A56 240 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 TESCQ96BS2 214 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 SNRNP40Q96DI7 357 aaKnown RBP16.71■□□□□ 0.27
CLN3-239ENST00000628023 ELP4Q96EB1 424 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 RILPQ96NA2 401 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 CCDC134Q9H6E4 229 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 FOLH1BQ9HBA9 442 aa16.71■□□□□ 0.27
CLN3-239ENST00000628023 C19orf53Q9UNZ5 99 aaPredicted RBP16.71■□□□□ 0.27
CLN3-239ENST00000628023 COPG1Q9Y678 874 aaKnown RBP16.71■□□□□ 0.27
CLN3-239ENST00000628023 C9JVG2 144 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 S100A3P33764 101 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 SOAT1P35610 550 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 SOX18P35713 384 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 EMDP50402 254 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 PRKAG1P54619 331 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 DCAF7P61962 342 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 PRR5P85299 388 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 MLC1Q15049 377 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 MAPKAPK3Q16644 382 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 FAM174BQ3ZCQ3 159 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 SPANXN4Q5MJ08 99 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 ANXA8L1Q5VT79 327 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 OR2L13Q8N349 312 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms