RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 GNG2P59768 71 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 RAB12Q6IQ22 244 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 RASGRP3Q8IV61 690 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 Q8N9G6 341 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-212ENST00000616140 OR4K13Q8NH42 304 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 MZB1Q8WU39 189 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 KHSRPQ92945 711 aaKnown RBP eCLIP13.31□□□□□ -0.28
CPSF1-212ENST00000616140 OR51E2Q9H255 320 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 TREM1Q9NP99 234 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 ANKMY1Q9P2S6 941 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 MAB21L2Q9Y586 359 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 PRSS21Q9Y6M0 314 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 TIAM2Q8IVF5 1701 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 SCO2O43819 266 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 GTF2F2P13984 249 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 S100A10P60903 97 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 GLT8D1Q68CQ7 371 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 LRFN4Q6PJG9 635 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 TTLL10Q6ZVT0 673 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 HSD11B1LQ7Z5J1 315 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 RNF175Q8N4F7 328 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 MS4A15Q8N5U1 240 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 NXPE2Q96DL1 559 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 SGTBQ96EQ0 304 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 SCGB3A2Q96PL1 93 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 USP22Q9UPT9 525 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 GABRR3A8MPY1 467 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 NUAK1O60285 661 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 FMO6PO60774 539 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 JRKO75564 520 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 NR2C1P13056 603 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 PCGF2P35227 344 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 ADRA1AP35348 466 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 CDKN2CP42773 168 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 KEAP1Q14145 624 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 ALG10BQ5I7T1 473 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 GKN2Q86XP6 184 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 EGFL6Q8IUX8 553 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 CYB561A3Q8NBI2 242 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 CHDHQ8NE62 594 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-212ENST00000616140 OR52E2Q8NGJ4 325 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 OR2L2Q8NH16 312 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 HS6ST2Q96MM7 605 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 OR4K3Q96R72 315 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 ORAI3Q9BRQ5 295 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 CPNE5Q9HCH3 593 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 GSKIPQ9P0R6 139 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 ABI3Q9P2A4 366 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 ENPP5Q9UJA9 477 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 TRIM64CA6NLI5 447 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 TMEM189-UBE2V1I3L0A0 370 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 PRKYO43930 277 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 ATE1O95260 518 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 PTTG1O95997 202 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 CAPNS1P04632 268 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 CD40LGP29965 261 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 HOXC12P31275 282 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 RPS15AP62244 130 aaKnown RBP13.31□□□□□ -0.28
CPSF1-212ENST00000616140 RELAQ04206 551 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 EMX1Q04741 257 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-212ENST00000616140 CCSAPQ6IQ19 270 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-212ENST00000616140 DUS1LQ6P1R4 473 aaKnown RBP13.31□□□□□ -0.28
CPSF1-212ENST00000616140 C1orf94Q6P1W5 598 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 ANKK1Q8NFD2 765 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 WDR20Q8TBZ3 569 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 MSLNLQ96KJ4 702 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 GTPBP2Q9BX10 602 aaKnown RBP13.31□□□□□ -0.28
CPSF1-212ENST00000616140 ZNF471Q9BX82 626 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-212ENST00000616140 BRF2Q9HAW0 419 aa13.31□□□□□ -0.28
CPSF1-212ENST00000616140 A0A0G2JPF8 293 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 C12orf71A8MTZ7 269 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 HNRNPCL3B7ZW38 293 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 MEN1O00255 615 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 ADAM12O43184 909 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 KLK3P07288 261 aaPredicted RBP13.3□□□□□ -0.28
CPSF1-212ENST00000616140 HNRNPCL4P0DMR1 293 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 CTSAP10619 480 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 IL7P13232 177 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 LHCGRP22888 699 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 CRHBPP24387 322 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 TACR1P25103 407 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 GPR143P51810 404 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 SHC2P98077 582 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 RUNX3Q13761 415 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 SELPLGQ14242 412 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 TRAM1Q15629 374 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 MAVSQ7Z434 540 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 CPOQ8IVL8 374 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 ITFG2Q969R8 447 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 TSACCQ96A04 125 aaPredicted RBP13.3□□□□□ -0.28
CPSF1-212ENST00000616140 SLC39A13Q96H72 371 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 BCL7BQ9BQE9 202 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 SORBS1Q9BX66 1292 aaKnown RBP13.3□□□□□ -0.28
CPSF1-212ENST00000616140 ZBTB20Q9HC78 741 aaPredicted RBP13.3□□□□□ -0.28
CPSF1-212ENST00000616140 HCSTQ9UBK5 93 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 MGAT4AQ9UM21 535 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 TMEM14AQ9Y6G1 99 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 OR52A4PA6NMU1 304 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 MUSKO15146 869 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 SCGB1D2O95969 90 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms