RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 EPS8L2Q9H6S3 715 aa13.66□□□□□ -0.22
CD48-203ENST00000613788 SLC25A37Q9NYZ2 338 aa13.66□□□□□ -0.22
CD48-203ENST00000613788 CORO2BQ9UQ03 480 aa13.66□□□□□ -0.22
CD48-203ENST00000613788 HEMK1Q9Y5R4 338 aaPredicted RBP13.66□□□□□ -0.22
CD48-203ENST00000613788 GMEB1Q9Y692 573 aa13.66□□□□□ -0.22
CD48-203ENST00000613788 ASPMQ8IZT6 3477 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 A0A087WV48 116 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 C15orf38-AP3S2A0A0A6YYH1 394 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 TRBV11-1A0A0K0K1C0 115 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 B2RBV5 119 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 HNRNPCL1O60812 293 aaKnown RBP13.65□□□□□ -0.22
CD48-203ENST00000613788 ATP5HO75947 161 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 CLPSP04118 112 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 MAGEA8P43361 318 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 ANXA11P50995 505 aaKnown RBP13.65□□□□□ -0.22
CD48-203ENST00000613788 DCAF7P61962 342 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 RNF4P78317 190 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 TXNL4AP83876 142 aaKnown RBP13.65□□□□□ -0.22
CD48-203ENST00000613788 BNIP1Q12981 228 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 DUSP8Q13202 625 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 ZNHIT3Q15649 155 aaPredicted RBP13.65□□□□□ -0.22
CD48-203ENST00000613788 NANOGP8Q6NSW7 305 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 MFSD12Q6NUT3 480 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 JMJD6Q6NYC1 403 aaPredicted RBP13.65□□□□□ -0.22
CD48-203ENST00000613788 ARPINQ7Z6K5 226 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 MSRB3Q8IXL7 192 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 CDRT4Q8N9R6 151 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 GIMAP5Q96F15 307 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 AURKBQ96GD4 344 aaPredicted RBP13.65□□□□□ -0.22
CD48-203ENST00000613788 SLC35G5Q96KT7 338 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 THUMPD3Q9BV44 507 aaKnown RBP13.65□□□□□ -0.22
CD48-203ENST00000613788 ACTRT3Q9BYD9 372 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 NANOGQ9H9S0 305 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 FOLH1BQ9HBA9 442 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 EQTNQ9NQ60 294 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 GPATCH2Q9NW75 528 aa13.65□□□□□ -0.22
CD48-203ENST00000613788 C2orf92A0A1B0GVN3 265 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 ARGFXA6NJG6 315 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 DUXAA6NLW8 204 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 TAF4O00268 1085 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 MATN1P21941 496 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 RASSF2P50749 326 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 TMPRSS3P57727 454 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 ZNF155Q12901 538 aaPredicted RBP13.64□□□□□ -0.23
CD48-203ENST00000613788 CAPRIN1Q14444 709 aaKnown RBP13.64□□□□□ -0.23
CD48-203ENST00000613788 LASP1Q14847 261 aaKnown RBP13.64□□□□□ -0.23
CD48-203ENST00000613788 IRAK1BP1Q5VVH5 260 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 C16orf89Q6UX73 402 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 CCDC121Q6ZUS5 278 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 C9orf40Q8IXQ3 194 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 KIF2BQ8N4N8 673 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 KDF1Q8NAX2 398 aaPredicted RBP13.64□□□□□ -0.23
CD48-203ENST00000613788 C17orf47Q8NEP4 570 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 OR8J3Q8NGG0 315 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 OR52N2Q8NGI0 321 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 NUBPLQ8TB37 319 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 ADAMTS15Q8TE58 950 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 ZNF223Q9UK11 482 aaPredicted RBP13.64□□□□□ -0.23
CD48-203ENST00000613788 AP3M1Q9Y2T2 418 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 PCDHGB3Q9Y5G1 929 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 K7ENP7 123 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 FXYD1O00168 92 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 UNC5CO95185 931 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 AGR2O95994 175 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 ALOX5P09917 674 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 DRD5P21918 477 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 PPICP45877 212 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 SOX8P57073 446 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 Q0VFX4 171 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 EBPQ15125 230 aaKnown RBP13.64□□□□□ -0.23
CD48-203ENST00000613788 DEFB109BQ30KR1 87 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 CDC73Q6P1J9 531 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 INO80CQ6PI98 192 aaPredicted RBP13.64□□□□□ -0.23
CD48-203ENST00000613788 RNF130Q86XS8 419 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 PNPT1Q8TCS8 783 aaKnown RBP13.64□□□□□ -0.23
CD48-203ENST00000613788 MIPOL1Q8TD10 442 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 SLC9A6Q92581 669 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 JADE3Q92613 823 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 TP53INP1Q96A56 240 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 C16orf58Q96GQ5 468 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 THOC3Q96J01 351 aaKnown RBP13.64□□□□□ -0.23
CD48-203ENST00000613788 VSTM2LQ96N03 204 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 GAL3ST4Q96RP7 486 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 CPPED1Q9BRF8 314 aaPredicted RBP13.64□□□□□ -0.23
CD48-203ENST00000613788 GPATCH1Q9BRR8 931 aaKnown RBP13.64□□□□□ -0.23
CD48-203ENST00000613788 SLC39A3Q9BRY0 314 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 LMF2Q9BU23 707 aaKnown RBP13.64□□□□□ -0.23
CD48-203ENST00000613788 WWTR1Q9GZV5 400 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 LHPPQ9H008 270 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 ING2Q9H160 280 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 C1orf21Q9H246 121 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 GIN1Q9NXP7 522 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 GPR55Q9Y2T6 319 aaPredicted RBP13.64□□□□□ -0.23
CD48-203ENST00000613788 L3MBTL1Q9Y468 752 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 NCOR2Q9Y618 2525 aa13.64□□□□□ -0.23
CD48-203ENST00000613788 CEP295Q9C0D2 2601 aa13.63□□□□□ -0.23
CD48-203ENST00000613788 A8MUI8 341 aa13.63□□□□□ -0.23
CD48-203ENST00000613788 MASP2O00187 686 aa13.63□□□□□ -0.23
CD48-203ENST00000613788 CELA2AP08217 269 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms