RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 WASHC1A8K0Z3 465 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 H3BSH0 61 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 C1orf105O95561 183 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 HBQ1P09105 142 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 SSTR2P30874 369 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 RPL4P36578 427 aaKnown RBP11.92□□□□□ -0.5
LIG1-221ENST00000613670 KIR2DL3P43628 341 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 GPR50Q13585 617 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 SLX4IPQ5VYV7 408 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 LINGO2Q7L985 606 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 CPOQ8IVL8 374 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 NANOGP1Q8N7R0 232 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 ZCCHC10Q8TBK6 192 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 SPRYD4Q8WW59 207 aaPredicted RBP11.92□□□□□ -0.5
LIG1-221ENST00000613670 TBC1D20Q96BZ9 403 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 ZNF689Q96CS4 500 aaPredicted RBP11.92□□□□□ -0.5
LIG1-221ENST00000613670 MYNNQ9NPC7 610 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 BRD7Q9NPI1 651 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 TMEM39AQ9NV64 488 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 PPIEQ9UNP9 301 aaKnown RBP11.92□□□□□ -0.5
LIG1-221ENST00000613670 BACE2Q9Y5Z0 518 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 H0YC42 278 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 PRODHO43272 600 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 VNN2O95498 520 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 HOXC8P31273 242 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 TAP2Q03519 686 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 TRAM2Q15035 370 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 P2RY14Q15391 338 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 KHDRBS2Q5VWX1 349 aaKnown RBP11.91□□□□□ -0.5
LIG1-221ENST00000613670 PLPP4Q5VZY2 271 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 PGBD2Q6P3X8 592 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 PLBD1Q6P4A8 553 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 NRMQ8IXM6 262 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 FAM98AQ8NCA5 519 aaKnown RBP11.91□□□□□ -0.5
LIG1-221ENST00000613670 FBLIM1Q8WUP2 373 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 SLC25A46Q96AG3 418 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 GON7Q9BXV9 100 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 RBFOX1Q9NWB1 397 aaKnown RBP11.91□□□□□ -0.5
LIG1-221ENST00000613670 SESN1Q9Y6P5 492 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 NDUFS4O43181 175 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 HCN1O60741 890 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 PRKRAO75569 313 aaKnown RBP11.91□□□□□ -0.5
LIG1-221ENST00000613670 ACADMP11310 421 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 SDHBP21912 280 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 MMP11P24347 488 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 ZNF33BQ06732 778 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 ZXDCQ2QGD7 858 aaPredicted RBP11.91□□□□□ -0.5
LIG1-221ENST00000613670 SYT14P1Q58G82 188 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 WASH2PQ6VEQ5 465 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 RFPL4BQ6ZWI9 263 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 CEACAM19Q7Z692 300 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 TMEM145Q8NBT3 493 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 OR8K5Q8NH50 307 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 OR8D1Q8WZ84 308 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 IRF7Q92985 503 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 NARS2Q96I59 477 aaKnown RBP11.91□□□□□ -0.5
LIG1-221ENST00000613670 ZNF582Q96NG8 517 aaPredicted RBP11.91□□□□□ -0.5
LIG1-221ENST00000613670 BARHL1Q9BZE3 327 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 MKRN2Q9H000 416 aaKnown RBP11.91□□□□□ -0.5
LIG1-221ENST00000613670 CUEDC1Q9NWM3 386 aaPredicted RBP11.91□□□□□ -0.5
LIG1-221ENST00000613670 RDH8Q9NYR8 311 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 A0A1W2PRG6 482 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 MID1O15344 667 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 ADH1AP07327 375 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 CD3GP09693 182 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 CSNK2A2P19784 350 aaPredicted RBP11.91□□□□□ -0.5
LIG1-221ENST00000613670 RAE1P78406 368 aaKnown RBP11.91□□□□□ -0.5
LIG1-221ENST00000613670 POU4F3Q15319 338 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 TEAD2Q15562 447 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 ZNF805Q5CZA5 627 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 UNC5DQ6UXZ4 953 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 OR6T1Q8NGN1 323 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 CREB3L4Q8TEY5 395 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 CAMK1GQ96NX5 476 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 SPNS1Q9H2V7 528 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 TMEM38AQ9H6F2 299 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 DDX31Q9H8H2 851 aaKnown RBP11.91□□□□□ -0.5
LIG1-221ENST00000613670 TMEM138Q9NPI0 162 aa11.91□□□□□ -0.5
LIG1-221ENST00000613670 RGS17Q9UGC6 210 aaPredicted RBP11.91□□□□□ -0.5
LIG1-221ENST00000613670 RLN1P04808 185 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 ARSBP15848 533 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 DDCP20711 480 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 HOXD11P31277 338 aaPredicted RBP11.9□□□□□ -0.5
LIG1-221ENST00000613670 AHRP35869 848 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 ID2Q02363 134 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 PRPF38BQ5VTL8 546 aaKnown RBP11.9□□□□□ -0.5
LIG1-221ENST00000613670 FCRLBQ6BAA4 426 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 SLC9B2Q86UD5 537 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 OR2A12Q8NGT7 310 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 OR51A7Q8NH64 312 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 DHRS1Q96LJ7 313 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 HYLS1Q96M11 299 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 RAD9AQ99638 391 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 DPH7Q9BTV6 452 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 CACNG6Q9BXT2 260 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 HCFC1R1Q9NWW0 138 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 PLXNA1Q9UIW2 1896 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 CHURC1-FNTBB4DL54 471 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 FABP7O15540 132 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 INHAP05111 366 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms