RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 GSTA3Q16772 222 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 DPY19L1Q2PZI1 675 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 OR4F3Q6IEY1 312 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 OPN5Q6U736 354 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 IL20RBQ6UXL0 311 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 PRICKLE2Q7Z3G6 844 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 TAGAPQ8N103 731 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 SCMH1Q96GD3 660 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 MAGED4Q96JG8 741 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 VSTM2LQ96N03 204 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 HES7Q9BYE0 225 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 NXF5Q9H1B4 397 aaKnown RBP15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 NPHS2Q9NP85 383 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 SDR39U1Q9NRG7 319 aaPredicted RBP15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 SIRT3Q9NTG7 399 aaPredicted RBP15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 RYDENQ9NUL5 291 aaKnown RBP15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 FGFR1OP2Q9NVK5 253 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 ADAM21Q9UKJ8 722 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 ERVK-11Q9UQG0 969 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 PCDHGB6Q9Y5F9 930 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 ZNF462Q96JM2 2506 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 E9PBE3 544 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 SP1P08047 785 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 CD46P15529 392 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 DRD5P21918 477 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 IL12AP29459 219 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 KIR3DL1P43629 444 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 PPICP45877 212 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 MLLT10P55197 1068 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 WNT3P56703 355 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 DCAF7P61962 342 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 PHC1P78364 1004 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 NNATQ16517 81 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 PDCD4Q53EL6 469 aaKnown RBP15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 SPANXN4Q5MJ08 99 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 RPUSD3Q6P087 351 aaKnown RBP15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 MDGA2Q7Z553 956 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 RFWD2Q8NHY2 731 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 PSMA8Q8TAA3 256 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 STON2Q8WXE9 905 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 OR5P2Q8WZ92 322 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 LCORQ96JN0 433 aaPredicted RBP15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 C5orf34Q96MH7 638 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 BTBD9Q96Q07 612 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 SIKE1Q9BRV8 207 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 FOLH1BQ9HBA9 442 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 KLHL1Q9NR64 748 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 NTMQ9P121 344 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 DCTN4Q9UJW0 460 aa15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 GPR55Q9Y2T6 319 aaPredicted RBP15.27■□□□□ 0.04
CCDC28A-202ENST00000611852 NUP214P35658 2090 aaPredicted RBP15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 C9JVG2 144 aa15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 RNASET2O00584 256 aaKnown RBP15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 SCN2BO60939 215 aa15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 C6orf47O95873 294 aa15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 VIMP08670 466 aaKnown RBP15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 FBXO45P0C2W1 286 aa15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 CT45A8P0DMV1 189 aa15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 CT45A9P0DMV2 189 aa15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 GABPB1Q06547 395 aaPredicted RBP15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 ZNF791Q3KP31 576 aaPredicted RBP15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 FAM174BQ3ZCQ3 159 aa15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 CT45A2Q5DJT8 189 aa15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 SLC25A25Q6KCM7 469 aa15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 TMEM64Q6YI46 380 aa15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 TMEM125Q96AQ2 219 aa15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 SPACA9Q96E40 222 aaPredicted RBP15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 SGCZQ96LD1 299 aa15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 ZIM2Q9NZV7 527 aa15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 NPFFR2Q9Y5X5 522 aa15.27■□□□□ 0.03
CCDC28A-202ENST00000611852 FRG2CA6NGY1 282 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 ACOX3O15254 700 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 SLC28A2O43868 658 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 NME2P1O60361 137 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 ERN1O75460 977 aaKnown RBP15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 SLC22A3O75751 556 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 NME2P22392 152 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 ABCD3P28288 659 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 NRG3P56975 720 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 CORO7P57737 925 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 HBA1P69905 142 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 INPP5JQ15735 1006 aaPredicted RBP15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 MAPKAPK3Q16644 382 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 PRR30Q53SZ7 412 aaPredicted RBP15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 RTL4Q6ZR62 310 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 GALNTL5Q7Z4T8 443 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 CLECL1Q8IZS7 167 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 CISD2Q8N5K1 135 aaKnown RBP15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 GOLM1Q8NBJ4 401 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 TMEM178AQ8NBL3 297 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 GLB1L3Q8NCI6 653 aaPredicted RBP15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 SNRNP40Q96DI7 357 aaKnown RBP15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 FAM120BQ96EK7 910 aaKnown RBP15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 HSPBAP1Q96EW2 488 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 ZBTB18Q99592 522 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 CXorf36Q9H7Y0 433 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 C3orf14Q9HBI5 128 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 NEUROD4Q9HD90 331 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 TIMMDC1Q9NPL8 285 aa15.26■□□□□ 0.03
CCDC28A-202ENST00000611852 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms