RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 OR8J1Q8NGP2 316 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 ZFPM2Q8WW38 1151 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 CREB3L1Q96BA8 519 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 SLC6A5Q9Y345 797 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 A0A0U1RQJ8 604 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 LRRN4CLQ8ND94 238 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 OR8H1Q8NGG4 311 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 OR14A16Q8NHC5 309 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 IL17FQ96PD4 163 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 ZPBPQ9BS86 351 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 ZDHHC2Q9UIJ5 367 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 ABCG2Q9UNQ0 655 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 MSL3P1P0C860 447 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 GCGRP47871 477 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 ROR2Q01974 943 aaKnown RBP19.46■□□□□ 0.71
UPF1-207ENST00000599848 C5orf46Q6UWT4 87 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 CLIP4Q8N3C7 705 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 CREB3L4Q8TEY5 395 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 PRRX2Q99811 253 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 ZNF69Q9UC07 566 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 A0A1W2PPH5 198 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 EXOC3L2Q2M3D2 409 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 MTFR2Q6P444 385 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 TCEANCQ8N8B7 351 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 PAPOLGQ9BWT3 736 aaKnown RBP19.45■□□□□ 0.7
UPF1-207ENST00000599848 MAGED1Q9Y5V3 778 aaPredicted RBP19.45■□□□□ 0.7
UPF1-207ENST00000599848 SCAMP2O15127 329 aaKnown RBP19.45■□□□□ 0.7
UPF1-207ENST00000599848 SLC35F1Q5T1Q4 408 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 CYS1Q717R9 158 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 SPEF2Q9C093 1822 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 ZNF850A8MQ14 1090 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 RBBP9O75884 186 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 PSKH1P11801 424 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 CD79AP11912 226 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 ARSAP15289 507 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 SLC9A3P48764 834 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 GRAMD2AQ8IUY3 354 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 SIGLEC10Q96LC7 697 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 RBM24Q9BX46 236 aaKnown RBP19.45■□□□□ 0.7
UPF1-207ENST00000599848 ZNF367Q7RTV3 350 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 OR51G2Q8NGK0 314 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 SDHAF2Q9NX18 166 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 LRRC42Q9Y546 428 aa19.45■□□□□ 0.7
UPF1-207ENST00000599848 HCRTO43612 131 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 ITGB1P05556 798 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 MTHFD2P13995 350 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 FOXN2P32314 431 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 MAGEA12P43365 314 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 CSNK1A1P48729 337 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 SIM1P81133 766 aaPredicted RBP19.44■□□□□ 0.7
UPF1-207ENST00000599848 PDE7AQ13946 482 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 CNN3Q15417 329 aaKnown RBP19.44■□□□□ 0.7
UPF1-207ENST00000599848 MISPQ8IVT2 679 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 HUS1BQ8NHY5 278 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 JPH3Q8WXH2 748 aaPredicted RBP19.44■□□□□ 0.7
UPF1-207ENST00000599848 OR10A5Q9H207 317 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 OR10A2Q9H208 303 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 IL20RAQ9UHF4 553 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 CAMK2AQ9UQM7 478 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 ANKRD34BA5PLL1 514 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 CLDN8P56748 225 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 PM20D1Q6GTS8 502 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 NLGN4XQ8N0W4 816 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 DTD2Q96FN9 168 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 UBXN10Q96LJ8 280 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 HCFC2Q9Y5Z7 792 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 DNAJC25-GNG10A0A024R161 153 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 JRKO75564 520 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 LCATP04180 440 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 F3P13726 295 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 NPY5RQ15761 445 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 STK11Q15831 433 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 NNATQ16517 81 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 BORCS7Q96B45 105 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 BIRC7Q96CA5 298 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 ULBP3Q9BZM4 244 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 CPNE7Q9UBL6 633 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 FAM208AQ9UK61 1670 aaKnown RBP19.44■□□□□ 0.7
UPF1-207ENST00000599848 HHLA1C9JL84 531 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 IFNA7P01567 189 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 TSTQ16762 297 aaKnown RBP19.44■□□□□ 0.7
UPF1-207ENST00000599848 GALNT6Q8NCL4 622 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 KLF16Q9BXK1 252 aaPredicted RBP19.44■□□□□ 0.7
UPF1-207ENST00000599848 CUTCQ9NTM9 273 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 UBE2J1Q9Y385 318 aaPredicted RBP19.44■□□□□ 0.7
UPF1-207ENST00000599848 PRSS38A1L453 326 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 SURF4O15260 269 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 PRKYO43930 277 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 FDXRP22570 491 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 TRIM61Q5EBN2 209 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 VWA5B2Q8N398 1253 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 OR5B2Q96R09 309 aa19.44■□□□□ 0.7
UPF1-207ENST00000599848 IL10RAQ13651 578 aa19.43■□□□□ 0.7
UPF1-207ENST00000599848 RHEBQ15382 184 aa19.43■□□□□ 0.7
UPF1-207ENST00000599848 CNEP1R1Q8N9A8 125 aa19.43■□□□□ 0.7
UPF1-207ENST00000599848 CCDC120Q96HB5 630 aa19.43■□□□□ 0.7
UPF1-207ENST00000599848 VRK1Q99986 396 aaPredicted RBP19.43■□□□□ 0.7
UPF1-207ENST00000599848 SLC19A3Q9BZV2 496 aa19.43■□□□□ 0.7
UPF1-207ENST00000599848 DKK3Q9UBP4 350 aa19.43■□□□□ 0.7
UPF1-207ENST00000599848 CHRM5P08912 532 aaPredicted RBP19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms