RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ABCB7O75027 752 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 EPORP19235 508 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 GPX3P22352 226 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 IDUAP35475 653 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 PTGDSP41222 190 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 KIR2DL2P43627 348 aaPredicted RBP9.15□□□□□ -0.94
TRIM28-210ENST00000597618 TAS2R39P59534 338 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 SIRPAP78324 504 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 PLCXD2Q0VAA5 305 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 DDX39BQ13838 428 aaKnown RBP9.15□□□□□ -0.94
TRIM28-210ENST00000597618 NNATQ16517 81 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 BCL2A1Q16548 175 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 MSS51Q4VC12 460 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 OR52E8Q6IFG1 317 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 TRMT10BQ6PF06 316 aaKnown RBP9.15□□□□□ -0.94
TRIM28-210ENST00000597618 CYP20A1Q6UW02 462 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 ZC3HC1Q86WB0 502 aaKnown RBP9.15□□□□□ -0.94
TRIM28-210ENST00000597618 PLCZ1Q86YW0 608 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 IGDCC3Q8IVU1 814 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 GBP7Q8N8V2 638 aaPredicted RBP9.15□□□□□ -0.94
TRIM28-210ENST00000597618 PDPRQ8NCN5 879 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 GRK7Q8WTQ7 553 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 ESAMQ96AP7 390 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 REPS1Q96D71 796 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 ZBED6CLQ96FA7 236 aaPredicted RBP9.15□□□□□ -0.94
TRIM28-210ENST00000597618 TRMT61AQ96FX7 289 aaKnown RBP9.15□□□□□ -0.94
TRIM28-210ENST00000597618 CFAP36Q96G28 342 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 NODALQ96S42 347 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 AMBRA1Q9C0C7 1298 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 KLHL4Q9C0H6 718 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 NXF5Q9H1B4 397 aaKnown RBP9.15□□□□□ -0.94
TRIM28-210ENST00000597618 PLAC1Q9HBJ0 212 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 HEY2Q9UBP5 337 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 DKKL1Q9UK85 242 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 CDC42EP3Q9UKI2 254 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 LAMP3Q9UQV4 416 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 CFL2Q9Y281 166 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 PSAT1Q9Y617 370 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.14□□□□□ -0.952e-11■■■■■ 36.5
TRIM28-210ENST00000597618 A0A0A6YYD5 115 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 A0A1W2PR48 441 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 C2orf72A6NCS6 295 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 WASHC1A8K0Z3 465 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 ACOX3O15254 700 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 KLF4O43474 513 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 TMPRSS11DO60235 418 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 AIFM1O95831 613 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 CGAP01215 116 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 S100BP04271 92 aaPredicted RBP9.14□□□□□ -0.95
TRIM28-210ENST00000597618 THBDP07204 575 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 CT62P0C5K7 136 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 FAM58BPP0C7Q3 252 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 TBXA2RP21731 343 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 CNTFP26441 200 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 PIK3R1P27986 724 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 PIK3CBP42338 1070 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 SLC12A2P55011 1212 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 EEFSECP57772 596 aaKnown RBP9.14□□□□□ -0.95
TRIM28-210ENST00000597618 PHEXP78562 749 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 OCRLQ01968 901 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 FRG1Q14331 258 aaKnown RBP9.14□□□□□ -0.95
TRIM28-210ENST00000597618 CYP1B1Q16678 543 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 KRTAP24-1Q3LI83 254 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 ANKRD34AQ69YU3 496 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 MRM1Q6IN84 353 aaKnown RBP9.14□□□□□ -0.95
TRIM28-210ENST00000597618 C22orf34Q6ZV56 151 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 TRIM58Q8NG06 486 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 HUS1BQ8NHY5 278 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 OMA1Q96E52 524 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 TMEM204Q9BSN7 226 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 CD244Q9BZW8 370 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 CD274Q9NZQ7 290 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 PROCRQ9UNN8 238 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 DTX4Q9Y2E6 619 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 MRPS18CQ9Y3D5 142 aaKnown RBP9.14□□□□□ -0.95
TRIM28-210ENST00000597618 ASB4Q9Y574 426 aa9.14□□□□□ -0.95
TRIM28-210ENST00000597618 OVOL3O00110 214 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 UGT2B11O75310 529 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 EEDO75530 441 aaKnown RBP9.13□□□□□ -0.95
TRIM28-210ENST00000597618 ALDOAP04075 364 aaKnown RBP9.13□□□□□ -0.95
TRIM28-210ENST00000597618 PEPDP12955 493 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 EPB42P16452 691 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 NT5EP21589 574 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 PTX3P26022 381 aaPredicted RBP9.13□□□□□ -0.95
TRIM28-210ENST00000597618 ELK3P41970 407 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 ATP6V0D1P61421 351 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 HMGCS1Q01581 520 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 ILF2Q12905 390 aaKnown RBP9.13□□□□□ -0.95
TRIM28-210ENST00000597618 PPP1R7Q15435 360 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 STEAP4Q687X5 459 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 DESI1Q6ICB0 168 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 GRHL2Q6ISB3 625 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 NUDT13Q86X67 352 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 UBQLNLQ8IYU4 475 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 PDIK1LQ8N165 341 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 SPATA6LQ8N4H0 392 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 ZNF610Q8N9Z0 462 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 FIG4Q92562 907 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 AKAP1Q92667 903 aaKnown RBP eCLIP9.13□□□□□ -0.95
TRIM28-210ENST00000597618 GTPBP3Q969Y2 492 aaKnown RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms