RNA–Protein interactions for RNA: ENST00000583294.1

SMARCE1-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2

Gene SMARCE1, Length 476 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-219ENST00000583294 ZNF397Q8NF99 534 aaPredicted RBP4.36□□□□□ -1.71
SMARCE1-219ENST00000583294 OR52J3Q8NH60 311 aa4.36□□□□□ -1.71
SMARCE1-219ENST00000583294 FLVCR1-AS1Q8TAF5 88 aa4.36□□□□□ -1.71
SMARCE1-219ENST00000583294 LHX4Q969G2 390 aa4.36□□□□□ -1.71
SMARCE1-219ENST00000583294 FOXN4Q96NZ1 517 aa4.36□□□□□ -1.71
SMARCE1-219ENST00000583294 ALG9Q9H6U8 611 aa4.36□□□□□ -1.71
SMARCE1-219ENST00000583294 CNOT2Q9NZN8 540 aaKnown RBP4.36□□□□□ -1.71
SMARCE1-219ENST00000583294 FKBP7Q9Y680 259 aa4.36□□□□□ -1.71
SMARCE1-219ENST00000583294 TRAV9-2A0A087WT02 112 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 ZNF840PA6NDX5 716 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 TRABD2BA6NFA1 517 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 MAGEA4P43358 317 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 SLC6A8P48029 635 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 NUMBP49757 651 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 ARHGDIAP52565 204 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 IST1P53990 364 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 HMGCS2P54868 508 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 ZNF774Q6NX45 483 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 P2RY8Q86VZ1 359 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 CDC20BQ86Y33 519 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 SLC22A18ASQ8N1D0 253 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 MCCC1Q96RQ3 725 aaPredicted RBP4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 NDUFAF3Q9BU61 184 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 TMEM231Q9H6L2 316 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 ESM1Q9NQ30 184 aa4.35□□□□□ -1.71
SMARCE1-219ENST00000583294 A0A087WWV3 80 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 ERI2A8K979 691 aaKnown RBP4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 E2F3O00716 465 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 ZNF354AO60765 605 aaPredicted RBP4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 ZNF253O75346 499 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 ECDO95905 644 aaPredicted RBP4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 PIGRP01833 764 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 RPA1P27694 616 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 PRDX2P32119 198 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 NOP14P78316 857 aaKnown RBP4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 IL1RL1Q01638 556 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 LTB4RQ15722 352 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 CD226Q15762 336 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 ZNF699Q32M78 642 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 PARP10Q53GL7 1025 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 ATRAIDQ6UW56 229 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 FAM159AQ6UWV7 190 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 HPS6Q86YV9 775 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 CENPSQ8N2Z9 138 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 ARL14Q8N4G2 192 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 HDDC3Q8N4P3 179 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 GPATCH11Q8N954 259 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 TBCKQ8TEA7 893 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 U2AF1L4Q8WU68 220 aaKnown RBP4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 FCGR1BQ92637 280 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 CCDC51Q96ER9 411 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 SAMD8Q96LT4 415 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 FAM111AQ96PZ2 611 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 C19orf43Q9BQ61 176 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 FAM173AQ9BQD7 235 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 ATG10Q9H0Y0 220 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 TSPY26PQ9H489 355 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 AMBNQ9NP70 447 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 STARD5Q9NSY2 213 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 CUTCQ9NTM9 273 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 ZNF581Q9P0T4 197 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 CIDEBQ9UHD4 219 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 FZR1Q9UM11 496 aa4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 PIN4Q9Y237 131 aaKnown RBP4.34□□□□□ -1.71
SMARCE1-219ENST00000583294 NPIPA5A0A0B4J1W7 369 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 TRIM49BA6NDI0 452 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 CCT8L1PA6NM43 557 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 NPIPA5E9PKD4 350 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 BUB1O43683 1085 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 SSX5O60225 188 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 SRPX2O60687 465 aaPredicted RBP4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 STAM2O75886 525 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 STK17BO94768 372 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 RALAP11233 206 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 MAPK3P27361 379 aaPredicted RBP4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 RFC2P35250 354 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 PTGER3P43115 390 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 CSRP3P50461 194 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 NAAAQ02083 359 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 GABPB1Q06547 395 aaPredicted RBP4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 BNIP1Q12981 228 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 C15orf32Q32M92 178 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 TOR1AIP1Q5JTV8 583 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 LINC00242Q5T6M2 205 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 STOX1Q6ZVD7 989 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 GOLGA7Q7Z5G4 137 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 RANBP3LQ86VV4 465 aaPredicted RBP4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 NAXDQ8IW45 347 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 MRPL43Q8N983 215 aaKnown RBP4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 RHOXF1Q8NHV9 184 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 WDR36Q8NI36 951 aaKnown RBP4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 AGAP11Q8TF27 550 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 CRYGNQ8WXF5 182 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 C1orf147Q96MC9 270 aaPredicted RBP4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 KRT23Q9C075 422 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 ZBP1Q9H171 429 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 C1orf21Q9H246 121 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 CENPMQ9NSP4 180 aa4.33□□□□□ -1.72
SMARCE1-219ENST00000583294 SOHLH2Q9NX45 425 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms