RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 FAPQ12884 760 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 EBPQ15125 230 aaKnown RBP10.02□□□□□ -0.81
VPS53-207ENST00000570510 HIST2H2ACQ16777 129 aaPredicted RBP10.02□□□□□ -0.81
VPS53-207ENST00000570510 GRTP1Q5TC63 336 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 C6orf163Q5TEZ5 329 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 FNDC7Q5VTL7 733 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 HIST2H2AA3Q6FI13 130 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 C12orf54Q6X4T0 127 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 FRA10AC1Q70Z53 315 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 ST13P4Q8IZP2 240 aaPredicted RBP10.02□□□□□ -0.81
VPS53-207ENST00000570510 ACOT4Q8N9L9 421 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.02□□□□□ -0.81
VPS53-207ENST00000570510 TANKQ92844 425 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 FBXW5Q969U6 566 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 TP53INP1Q96A56 240 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 MARK4Q96L34 752 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 SFXN2Q96NB2 322 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 TACO1Q9BSH4 297 aaKnown RBP10.02□□□□□ -0.81
VPS53-207ENST00000570510 TBCDQ9BTW9 1192 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 PITHD1Q9GZP4 211 aaPredicted RBP10.02□□□□□ -0.81
VPS53-207ENST00000570510 SAYSD1Q9NPB0 183 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 SERHLQ9NQF3 203 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 PRDM7Q9NQW5 492 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 DNAJC11Q9NVH1 559 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 TMEM160Q9NX00 188 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 MS4A12Q9NXJ0 267 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 WWOXQ9NZC7 414 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 ANK3Q12955 4377 aaKnown RBP10.02□□□□□ -0.81
VPS53-207ENST00000570510 A0A1W2PP18 115 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 TCRBV9S1A1TA0A576 114 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 C2orf72A6NCS6 295 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 FRG2CA6NGY1 282 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 CLOCKO15516 846 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 ALDOAP04075 364 aaKnown RBP10.01□□□□□ -0.81
VPS53-207ENST00000570510 FESP07332 822 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 PYGBP11216 843 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 ZNF37AP17032 561 aaPredicted RBP10.01□□□□□ -0.81
VPS53-207ENST00000570510 HNF1AP20823 631 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 ATP5A1P25705 553 aaKnown RBP10.01□□□□□ -0.81
VPS53-207ENST00000570510 DPP4P27487 766 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 SPRP35270 261 aaPredicted RBP10.01□□□□□ -0.81
VPS53-207ENST00000570510 MAGEA4P43358 317 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 CDKN2DP55273 166 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 SLC37A1P57057 533 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 TIAL1Q01085 375 aaKnown RBP eCLIP10.01□□□□□ -0.81
VPS53-207ENST00000570510 ADPRMQ3LIE5 342 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 SLC30A6Q6NXT4 461 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 TRMT10BQ6PF06 316 aaKnown RBP10.01□□□□□ -0.81
VPS53-207ENST00000570510 SBSNQ6UWP8 590 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 SLCO4C1Q6ZQN7 724 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 ADAMTSL2Q86TH1 951 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 UBQLNLQ8IYU4 475 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 PRR22Q8IZ63 422 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 C17orf53Q8N3J3 647 aaPredicted RBP10.01□□□□□ -0.81
VPS53-207ENST00000570510 ZNF610Q8N9Z0 462 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 SMAP2Q8WU79 429 aaPredicted RBP10.01□□□□□ -0.81
VPS53-207ENST00000570510 CFAP36Q96G28 342 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 GPR22Q99680 433 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 NTMT1Q9BV86 223 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 DPH5Q9H2P9 285 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 NT5DC2Q9H857 520 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 ZDHHC18Q9NUE0 388 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 DKKL1Q9UK85 242 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 RNF112Q9ULX5 631 aa10.01□□□□□ -0.81
VPS53-207ENST00000570510 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.01□□□□□ -0.818e-6■■□□□ 12.9
VPS53-207ENST00000570510 ROS1P08922 2347 aa10□□□□□ -0.81
VPS53-207ENST00000570510 FAM234BA2RU67 622 aa10□□□□□ -0.81
VPS53-207ENST00000570510 RTCAO00442 366 aaKnown RBP10□□□□□ -0.81
VPS53-207ENST00000570510 EMC8O43402 210 aa10□□□□□ -0.81
VPS53-207ENST00000570510 KLF4O43474 513 aa10□□□□□ -0.81
VPS53-207ENST00000570510 SSX4O60224 188 aa10□□□□□ -0.81
VPS53-207ENST00000570510 SH3BGRLO75368 114 aa10□□□□□ -0.81
VPS53-207ENST00000570510 CD8BP10966 210 aa10□□□□□ -0.81
VPS53-207ENST00000570510 EPB42P16452 691 aa10□□□□□ -0.81
VPS53-207ENST00000570510 TCEA1P23193 301 aaKnown RBP10□□□□□ -0.81
VPS53-207ENST00000570510 GMPRP36959 345 aa10□□□□□ -0.81
VPS53-207ENST00000570510 BUD31P41223 144 aaPredicted RBP10□□□□□ -0.81
VPS53-207ENST00000570510 KIR2DL2P43627 348 aaPredicted RBP10□□□□□ -0.81
VPS53-207ENST00000570510 LHX2P50458 406 aa10□□□□□ -0.81
VPS53-207ENST00000570510 NEK2P51955 445 aa10□□□□□ -0.81
VPS53-207ENST00000570510 SLC12A2P55011 1212 aa10□□□□□ -0.81
VPS53-207ENST00000570510 EEFSECP57772 596 aaKnown RBP10□□□□□ -0.81
VPS53-207ENST00000570510 ATP6V0D1P61421 351 aa10□□□□□ -0.81
VPS53-207ENST00000570510 SLMAPQ14BN4 828 aa10□□□□□ -0.81
VPS53-207ENST00000570510 TMEM249Q2WGJ8 235 aa10□□□□□ -0.81
VPS53-207ENST00000570510 CYB5R2Q6BCY4 276 aa10□□□□□ -0.81
VPS53-207ENST00000570510 PPP4R4Q6NUP7 873 aa10□□□□□ -0.81
VPS53-207ENST00000570510 ZDHHC24Q6UX98 284 aa10□□□□□ -0.81
VPS53-207ENST00000570510 DGAT2L6Q6ZPD8 337 aa10□□□□□ -0.81
VPS53-207ENST00000570510 TCAIMQ8N3R3 496 aa10□□□□□ -0.81
VPS53-207ENST00000570510 TNFRSF13CQ96RJ3 184 aa10□□□□□ -0.81
VPS53-207ENST00000570510 CENPKQ9BS16 269 aa10□□□□□ -0.81
VPS53-207ENST00000570510 LRRC1Q9BTT6 524 aa10□□□□□ -0.81
VPS53-207ENST00000570510 G6PC3Q9BUM1 346 aa10□□□□□ -0.81
VPS53-207ENST00000570510 OSBPL11Q9BXB4 747 aa10□□□□□ -0.81
VPS53-207ENST00000570510 DERL2Q9GZP9 239 aa10□□□□□ -0.81
VPS53-207ENST00000570510 C12orf65Q9H3J6 166 aaKnown RBP10□□□□□ -0.81
VPS53-207ENST00000570510 EXO1Q9UQ84 846 aaKnown RBP10□□□□□ -0.81
VPS53-207ENST00000570510 HEATR5AQ86XA9 2040 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 FAM95CA0A1B0GW59 222 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms