RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 FAPQ12884 760 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 E2F2Q14209 437 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 TECPR1Q7Z6L1 1165 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 OR5P2Q8WZ92 322 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 ZNF354BQ96LW1 612 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 SPATA2Q9UM82 520 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 NTNG1Q9Y2I2 539 aa13.69□□□□□ -0.22
VPS35-210ENST00000568784 RGS13O14921 159 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 ALX3O95076 343 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 IL1AP01583 271 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 PCCBP05166 539 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 SRPRAP08240 638 aaKnown RBP13.68□□□□□ -0.22
VPS35-210ENST00000568784 NTHL1P78549 312 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 CAP1Q01518 475 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 MAB21L1Q13394 359 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 ZNF311Q5JNZ3 666 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 Q6ZNB5 142 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 RFPL4BQ6ZWI9 263 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 SMG7Q92540 1137 aaKnown RBP13.68□□□□□ -0.22
VPS35-210ENST00000568784 CXorf40BQ96DE9 158 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 SLC6A18Q96N87 628 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 ABCG5Q9H222 651 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 ADAM30Q9UKF2 790 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 ENTPD4Q9Y227 616 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 LOC105369274A0A096LPK9 316 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 TNFRSF10AO00220 468 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 TGM5O43548 720 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 CXCL14O95715 111 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 ERP29P30040 261 aaKnown RBP13.68□□□□□ -0.22
VPS35-210ENST00000568784 WASP42768 502 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 DCDC1P59894 354 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 FLYWCH1Q4VC44 716 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 FAM205BPQ63HN1 556 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 SLC36A4Q6YBV0 504 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 LUZP2Q86TE4 346 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 OR4N4Q8N0Y3 316 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 BEST4Q8NFU0 473 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 TRMT2BQ96GJ1 504 aaKnown RBP13.68□□□□□ -0.22
VPS35-210ENST00000568784 IRAK3Q9Y616 596 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 SLC5A10A0PJK1 596 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 PPM1FP49593 454 aaPredicted RBP13.68□□□□□ -0.22
VPS35-210ENST00000568784 PRLHRP49683 370 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 EFR3AQ14156 821 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 TMEM107Q6UX40 140 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 LAS2Q8IYD9 372 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 IRF7Q92985 503 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 PDXPQ96GD0 296 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 C16orf58Q96GQ5 468 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 PPIL3Q9H2H8 161 aaKnown RBP13.68□□□□□ -0.22
VPS35-210ENST00000568784 RHBGQ9H310 441 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 SLA2Q9H6Q3 261 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 HTTP42858 3142 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 DDCP20711 480 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 CLCNKAP51800 687 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 KHDRBS2Q5VWX1 349 aaKnown RBP13.68□□□□□ -0.22
VPS35-210ENST00000568784 HTR3DQ70Z44 454 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 NUDT13Q86X67 352 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 TMEM145Q8NBT3 493 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 BBS10Q8TAM1 723 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 QRFPRQ96P65 431 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 FERD3LQ96RJ6 166 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 NEUROD4Q9HD90 331 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 ENAMQ9NRM1 1142 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 TM7SF3Q9NS93 570 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 KLHL28Q9NXS3 571 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 NPAP1Q9NZP6 1156 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 REV1Q9UBZ9 1251 aa13.68□□□□□ -0.22
VPS35-210ENST00000568784 HMGN4O00479 90 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 PLA2G10O15496 165 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 ERI3O43414 337 aaKnown RBP13.67□□□□□ -0.22
VPS35-210ENST00000568784 REM1O75628 298 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 CRYZL1O95825 349 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 ALAS2P22557 587 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 PPP3R1P63098 170 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 PIP5KL1Q5T9C9 394 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 FCRLBQ6BAA4 426 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 PARS2Q7L3T8 475 aaKnown RBP13.67□□□□□ -0.22
VPS35-210ENST00000568784 AMER3Q8N944 861 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 KREMEN2Q8NCW0 462 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 SIMC1Q8NDZ2 872 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 SPRYD4Q8WW59 207 aaPredicted RBP13.67□□□□□ -0.22
VPS35-210ENST00000568784 ZNF689Q96CS4 500 aaPredicted RBP13.67□□□□□ -0.22
VPS35-210ENST00000568784 NUS1Q96E22 293 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 MED20Q9H944 212 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 PLEKHB1Q9UF11 243 aaPredicted RBP13.67□□□□□ -0.22
VPS35-210ENST00000568784 ATG2BQ96BY7 2078 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 MN1Q10571 1320 aaPredicted RBP13.67□□□□□ -0.22
VPS35-210ENST00000568784 GBF1Q92538 1859 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 ZC3H12DA2A288 527 aaKnown RBP13.67□□□□□ -0.22
VPS35-210ENST00000568784 NRG2O14511 850 aaPredicted RBP13.67□□□□□ -0.22
VPS35-210ENST00000568784 SSNA1O43805 119 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 NOS3P29474 1203 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 RPS5P46782 204 aaKnown RBP13.67□□□□□ -0.22
VPS35-210ENST00000568784 SNRPGP62308 76 aaKnown RBP13.67□□□□□ -0.22
VPS35-210ENST00000568784 ZNF805Q5CZA5 627 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 HENMT1Q5T8I9 393 aaKnown RBP13.67□□□□□ -0.22
VPS35-210ENST00000568784 OR8K5Q8NH50 307 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 GPA33Q99795 319 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 TAPBPLQ9BX59 468 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 TNFRSF10DQ9UBN6 386 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms