RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PLCXD2Q0VAA5 305 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 ZNF155Q12901 538 aaPredicted RBP11.99□□□□□ -0.49
CLK3-224ENST00000568605 HSPB3Q12988 150 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 PTGR1Q14914 329 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 ZNHIT3Q15649 155 aaPredicted RBP11.99□□□□□ -0.49
CLK3-224ENST00000568605 NTRK2Q16620 822 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 TRMT12Q53H54 448 aaKnown RBP11.99□□□□□ -0.49
CLK3-224ENST00000568605 TBCELQ5QJ74 424 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 SLC22A10Q63ZE4 541 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 TMEM107Q6UX40 140 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 FAM47EQ6ZV65 393 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 MDGA2Q7Z553 956 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.99□□□□□ -0.49
CLK3-224ENST00000568605 FBXW8Q8N3Y1 598 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 CPSF7Q8N684 471 aaKnown RBP11.99□□□□□ -0.49
CLK3-224ENST00000568605 KAT2AQ92830 837 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 ADIPOR1Q96A54 375 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 AMDHD1Q96NU7 426 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 GLIPR2Q9H4G4 154 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 MEAF6Q9HAF1 191 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 ACSS1Q9NUB1 689 aaPredicted RBP11.99□□□□□ -0.49
CLK3-224ENST00000568605 CNIH4Q9P003 139 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 SEC14L3Q9UDX4 400 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 BAIAP2L1Q9UHR4 511 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 POLEQ07864 2286 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 TTC36A6NLP5 189 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 PLOD2O00469 737 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 ERN1O75460 977 aaKnown RBP11.98□□□□□ -0.49
CLK3-224ENST00000568605 NAGAP17050 411 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 PPICP45877 212 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 UQCRFS1P47985 274 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 EMDP50402 254 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 TDGF1P3P51864 188 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 MANFP55145 182 aaKnown RBP11.98□□□□□ -0.49
CLK3-224ENST00000568605 GPR85P60893 370 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 KCNJ2P63252 427 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 OCRLQ01968 901 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 PLGLB1Q02325 96 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 NNATQ16517 81 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 DPY19L1Q2PZI1 675 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 ZNF791Q3KP31 576 aaPredicted RBP11.98□□□□□ -0.49
CLK3-224ENST00000568605 KRTCAP3Q53RY4 240 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 CPTPQ5TA50 214 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 ZNF324BQ6AW86 544 aaPredicted RBP11.98□□□□□ -0.49
CLK3-224ENST00000568605 ANKRD26P1Q6NSI1 321 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 GFRALQ6UXV0 394 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 BNC2Q6ZN30 1099 aaPredicted RBP11.98□□□□□ -0.49
CLK3-224ENST00000568605 RGS9BPQ6ZS82 235 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 SZRD1Q7Z422 152 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 SULF2Q8IWU5 870 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 SLC34A3Q8N130 599 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 ZFP62Q8NB50 900 aaPredicted RBP11.98□□□□□ -0.49
CLK3-224ENST00000568605 OR7G2Q8NG99 324 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 PIWIL2Q8TC59 973 aaKnown RBP11.98□□□□□ -0.49
CLK3-224ENST00000568605 PAQR8Q8TEZ7 354 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 BTBD9Q96Q07 612 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 SECISBP2Q96T21 854 aaKnown RBP11.98□□□□□ -0.49
CLK3-224ENST00000568605 FAM173AQ9BQD7 235 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 NXF5Q9H1B4 397 aaKnown RBP11.98□□□□□ -0.49
CLK3-224ENST00000568605 AKTIPQ9H8T0 292 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 FOLH1BQ9HBA9 442 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 C3orf14Q9HBI5 128 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 NEUROD4Q9HD90 331 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 INTS9Q9NV88 658 aaKnown RBP11.98□□□□□ -0.49
CLK3-224ENST00000568605 PNPOQ9NVS9 261 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 MARCOQ9UEW3 520 aaPredicted RBP11.98□□□□□ -0.49
CLK3-224ENST00000568605 ATP6V1HQ9UI12 483 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 BOKQ9UMX3 212 aaPredicted RBP11.98□□□□□ -0.49
CLK3-224ENST00000568605 EXO1Q9UQ84 846 aaKnown RBP11.98□□□□□ -0.49
CLK3-224ENST00000568605 DTX4Q9Y2E6 619 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 NPFFR2Q9Y5X5 522 aa11.98□□□□□ -0.49
CLK3-224ENST00000568605 FLNCQ14315 2725 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 UQCRHLA0A096LP55 91 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 ZNF354AO60765 605 aaPredicted RBP11.97□□□□□ -0.49
CLK3-224ENST00000568605 ABCB7O75027 752 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 PPM1BO75688 479 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 CBX6O95503 412 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 KITP10721 976 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 DRD5P21918 477 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 ABCD3P28288 659 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 FRKP42685 505 aaPredicted RBP11.97□□□□□ -0.49
CLK3-224ENST00000568605 CLNS1AP54105 237 aaKnown RBP11.97□□□□□ -0.49
CLK3-224ENST00000568605 C21orf58P58505 322 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 MRPS22P82650 360 aaKnown RBP11.97□□□□□ -0.49
CLK3-224ENST00000568605 PRR5P85299 388 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 MRPL49Q13405 166 aaKnown RBP11.97□□□□□ -0.49
CLK3-224ENST00000568605 MLC1Q15049 377 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.97□□□□□ -0.496e-8■□□□□ 8.3
CLK3-224ENST00000568605 VPS26BQ4G0F5 336 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 ZNF385BQ569K4 471 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 HSP90B2PQ58FF3 399 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 FHL5Q5TD97 284 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 OGFOD2Q6N063 350 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 LYPD8Q6UX82 237 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 SLC22A16Q86VW1 577 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 OR2L13Q8N349 312 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 OR2M7Q8NG81 312 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 CEP70Q8NHQ1 597 aa11.97□□□□□ -0.49
CLK3-224ENST00000568605 ZNF75CPQ92670 426 aaPredicted RBP11.97□□□□□ -0.49
CLK3-224ENST00000568605 DIO2Q92813 273 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms