RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 PTPMT1Q8WUK0 201 aaPredicted RBP11.95□□□□□ -0.5
CLK3-214ENST00000564096 POP5Q969H6 163 aaKnown RBP11.95□□□□□ -0.5
CLK3-214ENST00000564096 STACQ99469 402 aa11.95□□□□□ -0.5
CLK3-214ENST00000564096 TMEM121BQ9BXQ6 578 aaPredicted RBP11.95□□□□□ -0.5
CLK3-214ENST00000564096 OR10A5Q9H207 317 aa11.95□□□□□ -0.5
CLK3-214ENST00000564096 OR51I1Q9H343 314 aa11.95□□□□□ -0.5
CLK3-214ENST00000564096 TMEM38AQ9H6F2 299 aa11.95□□□□□ -0.5
CLK3-214ENST00000564096 AKIRIN1Q9H9L7 192 aaPredicted RBP11.95□□□□□ -0.5
CLK3-214ENST00000564096 CACYBPQ9HB71 228 aaKnown RBP11.95□□□□□ -0.5
CLK3-214ENST00000564096 ASCL3Q9NQ33 180 aa11.95□□□□□ -0.5
CLK3-214ENST00000564096 EXD2Q9NVH0 621 aa11.95□□□□□ -0.5
CLK3-214ENST00000564096 CALML5Q9NZT1 146 aa11.95□□□□□ -0.5
CLK3-214ENST00000564096 CD300AQ9UGN4 299 aa11.95□□□□□ -0.5
CLK3-214ENST00000564096 ZNF639Q9UID6 485 aa11.95□□□□□ -0.5
CLK3-214ENST00000564096 ERVK-11Q9UQG0 969 aa11.95□□□□□ -0.5
CLK3-214ENST00000564096 FARSAQ9Y285 508 aaKnown RBP11.95□□□□□ -0.5
CLK3-214ENST00000564096 ZNF451Q9Y4E5 1061 aa11.95□□□□□ -0.5
CLK3-214ENST00000564096 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 LOC102723996A0A087X1L8 192 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 A8MUA0 341 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 UMODP07911 640 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 SSTR4P31391 388 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 MVDP53602 400 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 EEF1A2Q05639 463 aaKnown RBP11.94□□□□□ -0.5
CLK3-214ENST00000564096 TRAP1Q12931 704 aaKnown RBP11.94□□□□□ -0.5
CLK3-214ENST00000564096 TRIM25Q14258 630 aaKnown RBP11.94□□□□□ -0.5
CLK3-214ENST00000564096 EXOSC7Q15024 291 aaKnown RBP11.94□□□□□ -0.5
CLK3-214ENST00000564096 EXT1Q16394 746 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 VMACQ2NL98 169 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 MTX3Q5HYI7 312 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 HLA-DQA1Q5Y7H0 255 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 DGAT2L6Q6ZPD8 337 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 SLC29A4Q7RTT9 530 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 C16orf62Q7Z3J2 963 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 DHFR2Q86XF0 187 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 CALHM3Q86XJ0 350 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 PROSER1Q86XN7 944 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 PTRH1Q86Y79 214 aaKnown RBP11.94□□□□□ -0.5
CLK3-214ENST00000564096 MARCH9Q86YJ5 346 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 C10orf67Q8IYJ2 551 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 HORMAD2Q8N7B1 307 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 COX18Q8N8Q8 333 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 B3GNT7Q8NFL0 401 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 OR1N1Q8NGS0 311 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 FBXO30Q8TB52 745 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 SLC9A6Q92581 669 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 UTP4Q969X6 686 aaKnown RBP11.94□□□□□ -0.5
CLK3-214ENST00000564096 GIMAP5Q96F15 307 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 VMP1Q96GC9 406 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 SENP5Q96HI0 755 aaPredicted RBP11.94□□□□□ -0.5
CLK3-214ENST00000564096 ZNF583Q96ND8 569 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 GPN2Q9H9Y4 310 aaPredicted RBP11.94□□□□□ -0.5
CLK3-214ENST00000564096 FOLH1BQ9HBA9 442 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 Q9N2J8 555 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 A4GALTQ9NPC4 353 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 DUSP22Q9NRW4 184 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 GIN1Q9NXP7 522 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 PACSIN3Q9UKS6 424 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 LIPT1Q9Y234 373 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 POMPQ9Y244 141 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 RRP15Q9Y3B9 282 aaKnown RBP11.94□□□□□ -0.5
CLK3-214ENST00000564096 PCDHGA6Q9Y5G7 932 aa11.94□□□□□ -0.5
CLK3-214ENST00000564096 HEMK1Q9Y5R4 338 aaPredicted RBP11.94□□□□□ -0.5
CLK3-214ENST00000564096 A0A1W2PQ72 361 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 ARPC2O15144 300 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 TNFRSF21O75509 655 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 PDE9AO76083 593 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 DDAH2O95865 285 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 IGKV3-11P04433 115 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 ARAFP10398 606 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 GGT1P19440 569 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 OTX2P32243 289 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 EFNA3P52797 238 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 CRISP3P54108 245 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 POLE2P56282 527 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 DCAF7P61962 342 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 AP2B1P63010 937 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 CDK6Q00534 326 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 DMTNQ08495 405 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 SCARB2Q14108 478 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 VEZF1Q14119 521 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 SSPNQ14714 243 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 FXNQ16595 210 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 COX20Q5RI15 118 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 ZZZ3Q8IYH5 903 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 FAM156AQ8NDB6 213 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 FAM13CQ8NE31 585 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 HIPK4Q8NE63 616 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 OR5D16Q8NGK9 328 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 FIG4Q92562 907 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 FAM162AQ96A26 154 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 NSMCE2Q96MF7 247 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 RNF145Q96MT1 663 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 IP6K3Q96PC2 410 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 OR7D2Q96RA2 312 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 LMF2Q9BU23 707 aaKnown RBP11.93□□□□□ -0.5
CLK3-214ENST00000564096 PIF1Q9H611 641 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 TRIM45Q9H8W5 580 aaPredicted RBP11.93□□□□□ -0.5
CLK3-214ENST00000564096 ACTR3BQ9P1U1 418 aa11.93□□□□□ -0.5
CLK3-214ENST00000564096 SPTBP11277 2137 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms