RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ACAD8Q9UKU7 415 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 HCFC2Q9Y5Z7 792 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 WNT6Q9Y6F9 365 aa12.46□□□□□ -0.41
CLN3-210ENST00000563874 USP34Q70CQ2 3546 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 A0A0G2JMP0 313 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 LOC102723532A0A0G2JNH3 316 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 C2orf92A0A1B0GVN3 265 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 SHISA3A0PJX4 238 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 FAM25AB3EWG3 89 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 FAM25CB3EWG5 89 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 FAM25GB3EWG6 89 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 DVL2O14641 736 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 PI15O43692 258 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 EPPINO95925 133 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 ALDH1A1P00352 501 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 NNMTP40261 264 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 GPR1P46091 355 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 SLC6A11P48066 632 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 GNG2P59768 71 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 SIX5Q8N196 739 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 KRT78Q8N1N4 520 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 ZNF557Q8N988 423 aaPredicted RBP12.46□□□□□ -0.42
CLN3-210ENST00000563874 GALNT6Q8NCL4 622 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 OR4F15Q8NGB8 312 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 ZDHHC5Q9C0B5 715 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 TMEM245Q9H330 911 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 NEUROD4Q9HD90 331 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 ACOXLQ9NUZ1 547 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 AHSPQ9NZD4 102 aa12.46□□□□□ -0.42
CLN3-210ENST00000563874 DNAH14Q0VDD8 3507 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 A0A0C4DFX4 3053 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 FAM240BA0A1B0GVZ2 78 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 A0A1W2PRQ8 180 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 TNFRSF10AO00220 468 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 LIMS3P0CW19 117 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 LIMS4P0CW20 117 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 ALAS2P22557 587 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 MTNR1AP48039 350 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 CHRNEQ04844 493 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 FAPQ12884 760 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 QSOX2Q6ZRP7 698 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 OR8D4Q8NGM9 314 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 UBE2E3Q969T4 207 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 UPRTQ96BW1 309 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 RIPOR3Q96MK2 946 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 MACROD1Q9BQ69 325 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 SAP130Q9H0E3 1048 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 HMX1Q9NP08 348 aaPredicted RBP12.45□□□□□ -0.42
CLN3-210ENST00000563874 LHX9Q9NQ69 397 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 ZCCHC3Q9NUD5 404 aaKnown RBP12.45□□□□□ -0.42
CLN3-210ENST00000563874 PLXNA2O75051 1894 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 A0A0X1KG70 313 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 ACP2P11117 423 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 CELP19835 753 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 MAPK9P45984 424 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 SMSP52788 366 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 CTBP2P56545 445 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 PCBP4P57723 403 aaKnown RBP12.45□□□□□ -0.42
CLN3-210ENST00000563874 SMIM11AP58511 58 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 ALDH6A1Q02252 535 aaKnown RBP12.45□□□□□ -0.42
CLN3-210ENST00000563874 KLHL22Q53GT1 634 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 C3orf38Q5JPI3 329 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 BPHLQ86WA6 291 aaPredicted RBP12.45□□□□□ -0.42
CLN3-210ENST00000563874 TMEM145Q8NBT3 493 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 FBXO15Q8NCQ5 510 aaPredicted RBP12.45□□□□□ -0.42
CLN3-210ENST00000563874 AP3S1Q92572 193 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 DTD2Q96FN9 168 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 SPHK2Q9NRA0 654 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 P2RX2Q9UBL9 471 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 CLCA2Q9UQC9 943 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 GSTK1Q9Y2Q3 226 aa12.45□□□□□ -0.42
CLN3-210ENST00000563874 CD8B2A6NJW9 211 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 CD8BP10966 210 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 IL12RB1P42701 662 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 CDK5Q00535 292 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 ZNF750Q32MQ0 723 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 ZNF791Q3KP31 576 aaPredicted RBP12.44□□□□□ -0.42
CLN3-210ENST00000563874 RNLSQ5VYX0 342 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 KIAA1161Q6NSJ0 714 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 C17orf64Q86WR6 236 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 MORN4Q8NDC4 146 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 SNAPC3Q92966 411 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 SENP5Q96HI0 755 aaPredicted RBP12.44□□□□□ -0.42
CLN3-210ENST00000563874 SLC35G5Q96KT7 338 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 MCUBQ9NWR8 336 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 UNC80Q8N2C7 3258 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 PRODHO43272 600 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 MTRF1O75570 445 aaKnown RBP12.44□□□□□ -0.42
CLN3-210ENST00000563874 DDX5P17844 614 aaKnown RBP12.44□□□□□ -0.42
CLN3-210ENST00000563874 CPN2P22792 545 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 TPBGQ13641 420 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 LASP1Q14847 261 aaKnown RBP12.44□□□□□ -0.42
CLN3-210ENST00000563874 TEAD2Q15562 447 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 WSCD2Q2TBF2 565 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 ADCK2Q7Z695 626 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 MARCH9Q86YJ5 346 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 GRPEL2Q8TAA5 225 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 TEX47Q8TBZ9 253 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 TMEM163Q8TC26 289 aa12.44□□□□□ -0.42
CLN3-210ENST00000563874 FGF11Q92914 225 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms