RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 PDPK1O15530 556 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 PLOD3O60568 738 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 VPS4BO75351 444 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 DCTN3O75935 186 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 SLITRK5O94991 958 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 CRYABP02511 175 aaKnown RBP8.64□□□□□ -1.03
LDLR-211ENST00000560173 IFI6P09912 130 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 FBXO45P0C2W1 286 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 PRPS2P11908 318 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 MPIP34949 423 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 HPCAL1P37235 193 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 UQCRFS1P47985 274 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 EMDP50402 254 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 EMX2Q04743 252 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 MAD2L1Q13257 205 aaPredicted RBP8.64□□□□□ -1.03
LDLR-211ENST00000560173 PTGR1Q14914 329 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 MAPKAPK3Q16644 382 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 SMU1Q2TAY7 513 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 ZNF791Q3KP31 576 aaPredicted RBP8.64□□□□□ -1.03
LDLR-211ENST00000560173 ZNF385BQ569K4 471 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 FHL5Q5TD97 284 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 HLA-DQA1Q5Y7H0 255 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 IL20RBQ6UXL0 311 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 RTL4Q6ZR62 310 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 GOLM1Q8NBJ4 401 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 PSD4Q8NDX1 1056 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 C17orf47Q8NEP4 570 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 OR7G2Q8NG99 324 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 DNAJB8Q8NHS0 232 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 NR4A3Q92570 626 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 TP53INP1Q96A56 240 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 CIDECQ96AQ7 238 aaPredicted RBP8.64□□□□□ -1.03
LDLR-211ENST00000560173 PPCDCQ96CD2 204 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 MTERF3Q96E29 417 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 SPACA9Q96E40 222 aaPredicted RBP8.64□□□□□ -1.03
LDLR-211ENST00000560173 SGCZQ96LD1 299 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 C7orf26Q96N11 449 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 FRMD6Q96NE9 622 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 ITPAQ9BY32 194 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 NUF2Q9BZD4 464 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 NXF5Q9H1B4 397 aaKnown RBP8.64□□□□□ -1.03
LDLR-211ENST00000560173 GLIPR2Q9H4G4 154 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 ANKRA2Q9H9E1 313 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 MEAF6Q9HAF1 191 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 SH2D2AQ9NP31 389 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 TIMMDC1Q9NPL8 285 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 OLAHQ9NV23 265 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 MARCOQ9UEW3 520 aaPredicted RBP8.64□□□□□ -1.03
LDLR-211ENST00000560173 BCAP29Q9UHQ4 241 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 ATP6V1HQ9UI12 483 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 VPS4AQ9UN37 437 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 EIF3LQ9Y262 564 aaKnown RBP8.64□□□□□ -1.03
LDLR-211ENST00000560173 CFL2Q9Y281 166 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 KLF13Q9Y2Y9 288 aaPredicted RBP8.64□□□□□ -1.03
LDLR-211ENST00000560173 USH1CQ9Y6N9 552 aa8.64□□□□□ -1.03
LDLR-211ENST00000560173 SPTBN1Q01082 2364 aaKnown RBP8.64□□□□□ -1.03
LDLR-211ENST00000560173 ANKRD17O75179 2603 aaKnown RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 A0A087WV62 115 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 A0A0G2JMM0 328 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 A0A1W2PPB8 328 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 A0A1W2PRS3 328 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 CCT8L1PA6NM43 557 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 KIR3DP1A8MWS1 328 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 PLOD2O00469 737 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 SDHDO14521 159 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 HDAC3O15379 428 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 PEX1O43933 1283 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 BCAS2O75934 225 aaPredicted RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 PSMG1O95456 288 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 CBX6O95503 412 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 G6PDP11413 515 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 EDN3P14138 238 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 GNLYP22749 145 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 MST1P26927 711 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 RPL3P39023 403 aaKnown RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 MC3RP41968 323 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 FRKP42685 505 aaPredicted RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 MEOX1P50221 254 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 NR0B1P51843 470 aaKnown RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 TDGF1P3P51864 188 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 C21orf58P58505 322 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 MRPL49Q13405 166 aaKnown RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 NNATQ16517 81 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 C4orf17Q53FE4 359 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 C6orf89Q6UWU4 347 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 TMEM107Q6UX40 140 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 TMEM64Q6YI46 380 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 ZNF551Q7Z340 670 aaPredicted RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 R3HCC1LQ7Z5L2 792 aaKnown RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 SULF2Q8IWU5 870 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 RIMKLAQ8IXN7 391 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 DND1Q8IYX4 353 aaKnown RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 TAGAPQ8N103 731 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 OR2L13Q8N349 312 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 CPSF7Q8N684 471 aaKnown RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 KRTCAP2Q8N6L1 136 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 POGLUT1Q8NBL1 392 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 FAM98AQ8NCA5 519 aaKnown RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 ST6GALNAC3Q8NDV1 305 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms