RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 DHTKD1Q96HY7 919 aaPredicted RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 VPS39Q96JC1 886 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 C18orf12Q96KH6 178 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 AGAP4Q96P64 663 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 RPP25Q9BUL9 199 aaKnown RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 ST6GALNAC5Q9BVH7 336 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 RBM4Q9BWF3 364 aaKnown RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 MRPL13Q9BYD1 178 aaKnown RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 PITPNM3Q9BZ71 974 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 TMEM117Q9H0C3 514 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 UPF3AQ9H1J1 476 aaKnown RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 PARLQ9H300 379 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 FAM124BQ9H5Z6 455 aaPredicted RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 DCTPP1Q9H773 170 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 KAT8Q9H7Z6 458 aaKnown RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 NT5DC2Q9H857 520 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 GPN2Q9H9Y4 310 aaPredicted RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 Q9HAA7 133 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 MEAF6Q9HAF1 191 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 FAM114A2Q9NRY5 505 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 AGPAT5Q9NUQ2 364 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 C1orf123Q9NWV4 160 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 BARHL2Q9NY43 387 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 AATFQ9NY61 560 aaKnown RBP eCLIP1.35□□□□□ -2.19
USP3-209ENST00000558925 GPR83Q9NYM4 423 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 GTSE1Q9NYZ3 720 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 NUDT4Q9NZJ9 180 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 RCOR3Q9P2K3 495 aaPredicted RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 MBD2Q9UBB5 411 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 BCAP29Q9UHQ4 241 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 ZNF490Q9ULM2 529 aaPredicted RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP1.35□□□□□ -2.19
USP3-209ENST00000558925 B9D1Q9UPM9 204 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 FKBP7Q9Y680 259 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 FGD5Q6ZNL6 1462 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 AFF2P51816 1311 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 HCFC1P51610 2035 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 IGLV7-46A0A075B6I9 117 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 LOC105371242A0A075B767 164 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 IGHV4-30-2A0A087WSY4 118 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 A0A0A6YYD4 124 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 TRGV8A0A0C4DH27 118 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 A0A0J9YVX5 310 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 A0A1B0GWJ7 208 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 TTC26A0AVF1 554 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 LRIT2A6NDA9 550 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 TRIM49BA6NDI0 452 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 ASB14A6NK59 587 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 ARHGEF33A8MVX0 844 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 PALM2-AKAP2B1ALY0 433 aaPredicted RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 E9PMD0 336 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 SGK494L7N484 410 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 PDHXO00330 501 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 SOCS3O14543 225 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 CYB561D2O14569 222 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 XPO1O14980 1071 aaKnown RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 ARPC1BO15143 372 aaKnown RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 CFLARO15519 480 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 LINC01565O15544 149 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 CLDN3O15551 220 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 BUB1O43683 1085 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 EDIL3O43854 480 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 FRAT2O75474 233 aaPredicted RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 TOXO94900 526 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 NDUFA7O95182 113 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 SEMA4FO95754 770 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 ASNSP08243 561 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 HCKP08631 526 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 WNT2P09544 360 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 IQCF3P0C7M6 154 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 GSTT2P0CG29 244 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 GSTT2BP0CG30 244 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 GP9P14770 177 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 HNRNPA2B1P22626 353 aaKnown RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 OXTRP30559 389 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 CA8P35219 290 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 SAA4P35542 130 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 HMGCLP35914 325 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 ETV5P41161 510 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 NUMBP49757 651 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 HNMTP50135 292 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 METAP1P53582 386 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 CRYBA2P53672 197 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 TMEM50BP56557 158 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 UBE2HP62256 183 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 PPIAP62937 165 aaKnown RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 ZNF85Q03923 595 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 ZP4Q12836 540 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 TFDP1Q14186 410 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 FASTKD3Q14CZ7 662 aaKnown RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 EMC2Q15006 297 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 CHI3L2Q15782 390 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 CCL14Q16627 93 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 PARP6Q2NL67 630 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 ANKRD55Q3KP44 614 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 NADK2Q4G0N4 442 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 C14orf177Q52M58 125 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 ACER2Q5QJU3 275 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 MUC21Q5SSG8 566 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 DDI2Q5TDH0 399 aa1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms