RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 OR5M11Q96RB7 305 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 SIGLEC11Q96RL6 698 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 FNDC11Q9BVV2 318 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 UCK2Q9BZX2 261 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 ZNF576Q9H609 170 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 RHBDL2Q9NX52 303 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 REV1Q9UBZ9 1251 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 PMF1-BGLAPU3KQ54 211 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 CACNA1IQ9P0X4 2223 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 LRRC72A6NJI9 287 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 CPSF4LA6NMK7 179 aaKnown RBP9.98□□□□□ -0.81
CUX1-217ENST00000558836 GABARAPO95166 117 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 APOL3O95236 402 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 ZIC2O95409 532 aaPredicted RBP9.98□□□□□ -0.81
CUX1-217ENST00000558836 CDK1P06493 297 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 FHP07954 510 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 SLC35G6P0C7Q6 338 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 NR2F6P10588 404 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 TGFBR2P37173 567 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 KHKP50053 298 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 PSMD7P51665 324 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 MAP4K2Q12851 820 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 ITGADQ13349 1161 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 MLC1Q15049 377 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 MED22Q15528 200 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 FIGLAQ6QHK4 219 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 ZER1Q7Z7L7 766 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 KRT73Q86Y46 540 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 DRAXINQ8NBI3 349 aaPredicted RBP9.98□□□□□ -0.81
CUX1-217ENST00000558836 SNRNP27Q8WVK2 155 aaKnown RBP9.98□□□□□ -0.81
CUX1-217ENST00000558836 IPCEF1Q8WWN9 437 aaPredicted RBP9.98□□□□□ -0.81
CUX1-217ENST00000558836 KLHL6Q8WZ60 621 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 CCNB1IP1Q9NPC3 277 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 HRASLS2Q9NWW9 162 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 GALNT8Q9NY28 637 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 ACTR10Q9NZ32 417 aa9.98□□□□□ -0.81
CUX1-217ENST00000558836 A6NCN8 305 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 SHISA7A6NL88 538 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 ZAR1LA6NP61 321 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 GADD45AP24522 165 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 IDUAP35475 653 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 PDX1P52945 283 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 PRR5P85299 388 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 RGS1Q08116 209 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 ILF3Q12906 894 aaKnown RBP eCLIP9.97□□□□□ -0.816e-11■■■■■ 27.8
CUX1-217ENST00000558836 MOGQ16653 247 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 ZNF829Q3KNS6 432 aaPredicted RBP9.97□□□□□ -0.81
CUX1-217ENST00000558836 TRMT12Q53H54 448 aaKnown RBP9.97□□□□□ -0.81
CUX1-217ENST00000558836 ZNF311Q5JNZ3 666 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 MLIPQ5VWP3 458 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 TCEANCQ8N8B7 351 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 ZNF675Q8TD23 568 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 TOE1Q96GM8 510 aaKnown RBP9.97□□□□□ -0.81
CUX1-217ENST00000558836 PLEKHA8Q96JA3 519 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 GDF15Q99988 308 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 GPR174Q9BXC1 333 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 TPSD1Q9BZJ3 242 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 POLMQ9NP87 494 aaPredicted RBP9.97□□□□□ -0.81
CUX1-217ENST00000558836 MAN2C1Q9NTJ4 1040 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 GIMAP4Q9NUV9 329 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 TVP23BQ9NYZ1 205 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 SCML1Q9UN30 329 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.97□□□□□ -0.81
CUX1-217ENST00000558836 PFDN1O60925 122 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 GUCY1B2O75343 617 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 APBB3O95704 486 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 IGHV4-34P06331 123 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 ADORA3P0DMS8 318 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 CKMT1AP12532 417 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 DDX5P17844 614 aaKnown RBP9.97□□□□□ -0.81
CUX1-217ENST00000558836 MMP11P24347 488 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 RANBP1P43487 201 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 CLK1P49759 484 aaKnown RBP9.97□□□□□ -0.81
CUX1-217ENST00000558836 RPS3AP61247 264 aaKnown RBP9.97□□□□□ -0.81
CUX1-217ENST00000558836 RPS15AP62244 130 aaKnown RBP9.97□□□□□ -0.81
CUX1-217ENST00000558836 ATP1A4Q13733 1029 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 C16orf62Q7Z3J2 963 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 TAF8Q7Z7C8 310 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 DEPDC4Q8N2C3 294 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 TMEM52Q8NDY8 209 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 SRFBP1Q8NEF9 429 aaKnown RBP9.97□□□□□ -0.81
CUX1-217ENST00000558836 OR4K5Q8NGD3 323 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 CDS1Q92903 461 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 MYDGFQ969H8 173 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 DTNBP1Q96EV8 351 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 SLC35A4Q96G79 324 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 ITPAQ9BY32 194 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 RBCK1Q9BYM8 510 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 OR51E2Q9H255 320 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 CNIH4Q9P003 139 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 CPNE7Q9UBL6 633 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 IL20RAQ9UHF4 553 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 CHST2Q9Y4C5 530 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 ASXL3Q9C0F0 2248 aa9.97□□□□□ -0.81
CUX1-217ENST00000558836 CENPVL1A0A0U1RR11 272 aa9.96□□□□□ -0.81
CUX1-217ENST00000558836 SH3PXD2BA1X283 911 aa9.96□□□□□ -0.81
CUX1-217ENST00000558836 EFCAB9A8MZ26 197 aa9.96□□□□□ -0.81
CUX1-217ENST00000558836 H0YGG7 62 aa9.96□□□□□ -0.81
CUX1-217ENST00000558836 TLR4O00206 839 aa9.96□□□□□ -0.81
CUX1-217ENST00000558836 EMC8O43402 210 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms