RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 PRUNE2Q8WUY3 3088 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 hCG_2039718K7EN88 272 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 HMGN4O00479 90 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 HS6ST1O60243 411 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 IFNW1P05000 195 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 BCHEP06276 602 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 PROS1P07225 676 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 CELA2BP08218 269 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-229ENST00000557348 IGFBP5P24593 272 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 AQP1P29972 269 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 LIM2P55344 173 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 CAMK2BQ13554 666 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 DEFB134Q4QY38 66 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 TNFAIP8L2Q6P589 184 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-229ENST00000557348 TBPL2Q6SJ96 375 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 USP53Q70EK8 1073 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 P2RY8Q86VZ1 359 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 CYP4Z1Q86W10 505 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 LGI4Q8N135 537 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 FRMD1Q8N878 549 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 SIMC1Q8NDZ2 872 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 GRPEL2Q8TAA5 225 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 SUN3Q8TAQ9 357 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 SLC38A5Q8WUX1 472 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 YIPF6Q96EC8 236 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 CNRIP1Q96F85 164 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-229ENST00000557348 MIR1-1HGQ9H1L0 117 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 ADNPQ9H2P0 1102 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 PRDM6Q9NQX0 595 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 NTMQ9P121 344 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 C5AR2Q9P296 337 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 PTGFRNQ9P2B2 879 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 KIF17Q9P2E2 1029 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 MKLN1Q9UL63 735 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 GRIP1Q9Y3R0 1128 aa11.9□□□□□ -0.5
SHMT2-229ENST00000557348 UNC80Q8N2C7 3258 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 ARRDC5A6NEK1 342 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 PGRMC2O15173 223 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 SCO2O43819 266 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 GCM2O75603 506 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-229ENST00000557348 C1QCP02747 245 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 RHCEP18577 417 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 CRYBA2P53672 197 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 TPTEP56180 551 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 SMIM11AP58511 58 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 BNC1Q01954 994 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 PRKCDQ05655 676 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 AQP6Q13520 282 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 KEAP1Q14145 624 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF691Q5VV52 312 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 GARNL3Q5VVW2 1013 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 C18orf63Q68DL7 685 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 FAM92BQ6ZTR7 304 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 SZRD1Q7Z422 152 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 C1orf216Q8TAB5 229 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 NR4A3Q92570 626 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 TMEM19Q96HH6 336 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 C10orf90Q96M02 699 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF681Q96N22 645 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF300Q96RE9 604 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-229ENST00000557348 MACROD1Q9BQ69 325 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 OR51I1Q9H343 314 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 TOR3AQ9H497 397 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 DUSP21Q9H596 190 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 KCMF1Q9P0J7 381 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 RAB23Q9ULC3 237 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 SATB2Q9UPW6 733 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 ENPP4Q9Y6X5 453 aa11.89□□□□□ -0.51
SHMT2-229ENST00000557348 A0A0G2JPF8 293 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 HNRNPCL2B2RXH8 293 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 HNRNPCL3B7ZW38 293 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 TMX2-CTNND1H3BSU7 103 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 SLC1A7O00341 560 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 SNPHO15079 494 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 BCAT2O15382 392 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-229ENST00000557348 P2RX6O15547 441 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 SLC28A2O43868 658 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 MAN1A2O60476 641 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 GALR3O60755 368 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-229ENST00000557348 NADKO95544 446 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-229ENST00000557348 APOA1P02647 267 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 STATHP02808 62 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 KRT8P05787 483 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 HNRNPCL4P0DMR1 293 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 NR2F1P10589 423 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 ANXA8P13928 327 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 ETV6P41212 452 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 MLLT10P55197 1068 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 ISL1P61371 349 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 CHRNEQ04844 493 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 IQCCQ4KMZ1 466 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 C14orf28Q4W4Y0 310 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 KDM4DQ6B0I6 523 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 FRMPD2BQ6IN97 320 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 CCDC116Q8IYX3 515 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 ANGPTL6Q8NI99 470 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 SETD6Q8TBK2 473 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 ZCCHC10Q8TBK6 192 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 TTC9Q92623 222 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 ZDHHC12Q96GR4 267 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms