RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 GSTA3Q16772 222 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 PRR30Q53SZ7 412 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-225ENST00000556798 IL20RBQ6UXL0 311 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 PRICKLE2Q7Z3G6 844 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 WDR53Q7Z5U6 358 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-225ENST00000556798 ANKRD46Q86W74 232 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 PRR22Q8IZ63 422 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 CYP4Z2PQ8N1L4 340 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 OR2L13Q8N349 312 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 OR9I1Q8NGQ6 314 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 TESCQ96BS2 214 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 NXF5Q9H1B4 397 aaKnown RBP16.16■□□□□ 0.18
SHMT2-225ENST00000556798 SIRT3Q9NTG7 399 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-225ENST00000556798 HPF1Q9NWY4 346 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 C19orf53Q9UNZ5 99 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-225ENST00000556798 ERVK-11Q9UQG0 969 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 PCDHGA10Q9Y5H3 936 aa16.16■□□□□ 0.18
SHMT2-225ENST00000556798 B8ZZF3 427 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 CFLARO15519 480 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 SUV39H1O43463 412 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 COQ9O75208 318 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 SLC25A12O75746 678 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 BCAS2O75934 225 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-225ENST00000556798 CORO7P57737 925 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 SRSF11Q05519 484 aaKnown RBP16.15■□□□□ 0.18
SHMT2-225ENST00000556798 MLC1Q15049 377 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 ZNF766Q5HY98 468 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 PAOXQ6QHF9 649 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 LYPD8Q6UX82 237 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 OR8J2Q8NGG1 315 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 OR5P2Q8WZ92 322 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 C5orf34Q96MH7 638 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 VSTM2LQ96N03 204 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 ZBTB18Q99592 522 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 SIKE1Q9BRV8 207 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 TMEM120AQ9BXJ8 343 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 EPN3Q9H201 632 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 CXorf36Q9H7Y0 433 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 TRIM45Q9H8W5 580 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-225ENST00000556798 EQTNQ9NQ60 294 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 SDR39U1Q9NRG7 319 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-225ENST00000556798 TAS2R9Q9NYW1 312 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 SNX8Q9Y5X2 465 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 NINQ8N4C6 2090 aa16.15■□□□□ 0.18
SHMT2-225ENST00000556798 PRRC2CQ9Y520 2896 aaKnown RBP16.15■□□□□ 0.18
SHMT2-225ENST00000556798 SHANK1Q9Y566 2161 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 ERN1O75460 977 aaKnown RBP16.14■□□□□ 0.17
SHMT2-225ENST00000556798 SLC22A3O75751 556 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 PSMG1O95456 288 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 TROVE2P10155 538 aaKnown RBP eCLIP16.14■□□□□ 0.17
SHMT2-225ENST00000556798 CD46P15529 392 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 S100A3P33764 101 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 PRKAG1P54619 331 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 MLLT10P55197 1068 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 HBA1P69905 142 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 DPY19L1Q2PZI1 675 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 OPN5Q6U736 354 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 NPSR1Q6W5P4 371 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 MDGA2Q7Z553 956 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 TAGAPQ8N103 731 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 MIER2Q8N344 545 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 NATD1Q8N6N6 113 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 TP53INP1Q96A56 240 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 SPACA9Q96E40 222 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-225ENST00000556798 FAM120BQ96EK7 910 aaKnown RBP16.14■□□□□ 0.17
SHMT2-225ENST00000556798 LCORQ96JN0 433 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-225ENST00000556798 RILPQ96NA2 401 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 ZNF317Q96PQ6 595 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-225ENST00000556798 ZIM2Q9NZV7 527 aa16.14■□□□□ 0.17
SHMT2-225ENST00000556798 TTLL8A6PVC2 850 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 RNASET2O00584 256 aaKnown RBP16.13■□□□□ 0.17
SHMT2-225ENST00000556798 EMC8O43402 210 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 SCN2BO60939 215 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 SP1P08047 785 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 IFI6P09912 130 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 FBXO45P0C2W1 286 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 SOAT1P35610 550 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 ZFP36L2P47974 494 aaKnown RBP16.13■□□□□ 0.17
SHMT2-225ENST00000556798 STX1BP61266 288 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 PMP22Q01453 160 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 MAPKAPK3Q16644 382 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 GALNTL5Q7Z4T8 443 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 CLEC4FQ8N1N0 589 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 SLC15A4Q8N697 577 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 HORMAD2Q8N7B1 307 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 C17orf47Q8NEP4 570 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 NUP43Q8NFH3 380 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 OR4A15Q8NGL6 344 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 OR5M3Q8NGP4 307 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 OR5AK3PQ8NH89 298 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 FBXO30Q8TB52 745 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 STON2Q8WXE9 905 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 SCMH1Q96GD3 660 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 MS4A4EQ96PG1 132 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 BTBD9Q96Q07 612 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 TRIM4Q9C037 500 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 C3orf14Q9HBI5 128 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 NEUROD4Q9HD90 331 aa16.13■□□□□ 0.17
SHMT2-225ENST00000556798 ZCCHC3Q9NUD5 404 aaKnown RBP16.13■□□□□ 0.17
SHMT2-225ENST00000556798 GPR55Q9Y2T6 319 aaPredicted RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms