RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 LHFPL3Q86UP9 236 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 KIF18BQ86Y91 864 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 C2orf73Q8N5S3 287 aaPredicted RBP16.55■□□□□ 0.24
SYNE3-202ENST00000553340 OR6T1Q8NGN1 323 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 NEIL3Q8TAT5 605 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 SCLYQ96I15 445 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 SLC35G5Q96KT7 338 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 NECTIN4Q96NY8 510 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 IL17FQ96PD4 163 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 GFM1Q96RP9 751 aaKnown RBP16.55■□□□□ 0.24
SYNE3-202ENST00000553340 SPATA5L1Q9BVQ7 753 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 ACAT2Q9BWD1 397 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 ZCCHC2Q9C0B9 1178 aaKnown RBP16.55■□□□□ 0.24
SYNE3-202ENST00000553340 OR2AG1Q9H205 316 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 HSPB11Q9Y547 144 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 CTSLP07711 333 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 CFL1P23528 166 aaKnown RBP16.54■□□□□ 0.24
SYNE3-202ENST00000553340 BSGP35613 385 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 MMP12P39900 470 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 AVPR1BP47901 424 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 SIGIRRQ6IA17 410 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 MARCH9Q86YJ5 346 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 NRSN1Q8IZ57 195 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 OR5D16Q8NGK9 328 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 TMED9Q9BVK6 235 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 HDHD5Q9BXW7 423 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 SLC46A2Q9BY10 475 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 TBC1D17Q9HA65 648 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 IL36AQ9UHA7 158 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 PHF11Q9UIL8 331 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 MTCL1Q9Y4B5 1905 aaKnown RBP16.54■□□□□ 0.24
SYNE3-202ENST00000553340 LOC102723532A0A0G2JNH3 316 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 WASHC1A8K0Z3 465 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 ISM1B1AKI9 464 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 LILRB5O75023 590 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 TBX6O95947 436 aaPredicted RBP16.54■□□□□ 0.24
SYNE3-202ENST00000553340 GAAP10253 952 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 SOX18P35713 384 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 CD79BP40259 229 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 NNMTP40261 264 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 SLC1A3P43003 542 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 GRIN2CQ14957 1233 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 ZNF57Q68EA5 555 aaPredicted RBP16.54■□□□□ 0.24
SYNE3-202ENST00000553340 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.54■□□□□ 0.24
SYNE3-202ENST00000553340 TMC8Q8IU68 726 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 ELMOD2Q8IZ81 293 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 FAM109AQ8N4B1 249 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 ZNF485Q8NCK3 441 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 OR5H6Q8NGV6 325 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 CHFRQ96EP1 664 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 CTPS2Q9NRF8 586 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 DENND4CQ5VZ89 1909 aa16.54■□□□□ 0.24
SYNE3-202ENST00000553340 KDM4EB2RXH2 506 aaPredicted RBP16.53■□□□□ 0.24
SYNE3-202ENST00000553340 INMT-MINDY4F8WBC2 141 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 NRG2O14511 850 aaPredicted RBP16.53■□□□□ 0.24
SYNE3-202ENST00000553340 NCR1O76036 304 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 SLC6A11P48066 632 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 MRGPREQ86SM8 312 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 SLC39A11Q8N1S5 342 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 ARIH2OSQ8N7S6 290 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 HCAR2Q8TDS4 363 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 CYB5D2Q8WUJ1 264 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 SMG7Q92540 1137 aaKnown RBP16.53■□□□□ 0.24
SYNE3-202ENST00000553340 AKAP1Q92667 903 aaKnown RBP eCLIP16.53■□□□□ 0.24
SYNE3-202ENST00000553340 OTULINQ96BN8 352 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 ZNF558Q96NG5 402 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 MS4A8Q9BY19 250 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 RHBGQ9H310 441 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 KCNK12Q9HB15 430 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 PAK6Q9NQU5 681 aaPredicted RBP16.53■□□□□ 0.24
SYNE3-202ENST00000553340 ACSS1Q9NUB1 689 aaPredicted RBP16.53■□□□□ 0.24
SYNE3-202ENST00000553340 TMEM39AQ9NV64 488 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 C12orf71A8MTZ7 269 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 CHST10O43529 356 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 AKAP8O43823 692 aaKnown RBP16.53■□□□□ 0.24
SYNE3-202ENST00000553340 UBXN7O94888 489 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 ALDH1A1P00352 501 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 LALBAP00709 142 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 PKLRP30613 574 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 IFNGR2P38484 337 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 ADAM15Q13444 863 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 LAMTOR1Q6IAA8 161 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 FAM83HQ6ZRV2 1179 aaPredicted RBP16.53■□□□□ 0.24
SYNE3-202ENST00000553340 TP53I13Q8NBR0 393 aaPredicted RBP16.53■□□□□ 0.24
SYNE3-202ENST00000553340 RAET1EQ8TD07 263 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 SORCS1Q8WY21 1168 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 SENP5Q96HI0 755 aaPredicted RBP16.53■□□□□ 0.24
SYNE3-202ENST00000553340 MKRN2Q9H000 416 aaKnown RBP16.53■□□□□ 0.24
SYNE3-202ENST00000553340 TEKT2Q9UIF3 430 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 CCL26Q9Y258 94 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 ITM2BQ9Y287 266 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 ASB4Q9Y574 426 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 CDH10Q9Y6N8 788 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 HTTP42858 3142 aa16.53■□□□□ 0.24
SYNE3-202ENST00000553340 SMLR1H3BR10 107 aa16.52■□□□□ 0.24
SYNE3-202ENST00000553340 GABRPO00591 440 aa16.52■□□□□ 0.24
SYNE3-202ENST00000553340 TEX28O15482 410 aa16.52■□□□□ 0.24
SYNE3-202ENST00000553340 TPD52L2O43399 206 aaKnown RBP16.52■□□□□ 0.24
SYNE3-202ENST00000553340 SLC19A2O60779 497 aa16.52■□□□□ 0.24
SYNE3-202ENST00000553340 CELP19835 753 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms