RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 NTNG1Q9Y2I2 539 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 KLHL20Q9Y2M5 609 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 GPR55Q9Y2T6 319 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 CMAHPQ9Y471 501 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 A0A0B4J293 547 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 IDH3BO43837 385 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 RAB36O95755 333 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 CLTBP09497 229 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 CSF3P09919 207 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 ERGP11308 486 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 SSR2P43308 183 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 CCR8P51685 355 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 NCBP2P52298 156 aaKnown RBP eCLIP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 CSNK1G2P78368 415 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 REEP5Q00765 189 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 TAGLNQ01995 201 aaKnown RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 RUNX1T1Q06455 604 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 DPTQ07507 201 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF234Q14588 700 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 TCEA2Q15560 299 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 HNRNPA1L2Q32P51 320 aaKnown RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 GLYR1Q49A26 553 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 C1QTNF12Q5T7M4 302 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF544Q6NX49 715 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 PRICKLE2Q7Z3G6 844 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 LHFPL3Q86UP9 236 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 MRPL43Q8N983 215 aaKnown RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF557Q8N988 423 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 OR8K5Q8NH50 307 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 HCAR2Q8TDS4 363 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 CHAC2Q8WUX2 184 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 OR8D1Q8WZ84 308 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 TMCO6Q96DC7 493 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 RNF31Q96EP0 1072 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 C1GALT1C1Q96EU7 318 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 ZBED6CLQ96FA7 236 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 TTYH2Q9BSA4 534 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 CFHR5Q9BXR6 569 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 POLDIP3Q9BY77 421 aaKnown RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 EQTNQ9NQ60 294 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 DIMT1Q9UNQ2 313 aaKnown RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 PLEKHM1Q9Y4G2 1056 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 OR1A2Q9Y585 309 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 NOX1Q9Y5S8 564 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 IRAK3Q9Y616 596 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 DNMT3AQ9Y6K1 912 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 A0A087WUU8 490 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 A0A1W2PRQ8 180 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 MEIOCA2RUB1 952 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 IGLON5A6NGN9 336 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 FAM47E-STBD1D6RA91 191 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 DVL2O14641 736 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 NCR1O76036 304 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 HMGN2P05204 90 aaKnown RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 CPEP16870 476 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 DDX6P26196 483 aaKnown RBP eCLIP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 P2RY2P41231 377 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 MAN2A2P49641 1150 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 HTRA3P83110 453 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 EFNB1P98172 346 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 CDK3Q00526 305 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 CDK5Q00535 292 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 FABP5Q01469 135 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 KRR1Q13601 381 aaKnown RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 C1DQ13901 141 aaKnown RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 MLF2Q15773 248 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 TBRG1Q3YBR2 411 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 CRTC2Q53ET0 693 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 GPAT3Q53EU6 434 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 C18orf63Q68DL7 685 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 OR4C11Q6IEV9 310 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 TMEM107Q6UX40 140 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 DGLUCYQ7Z3D6 616 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 VRK2Q86Y07 508 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 RAB43Q86YS6 212 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 CCDC116Q8IYX3 515 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 FAM26EQ8N5C1 309 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 OR52P1PQ8NH57 321 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 POF1BQ8WVV4 589 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 JPH3Q8WXH2 748 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 RGMAQ96B86 450 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 RNFT2Q96EX2 444 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 CNRIP1Q96F85 164 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 DIRAS2Q96HU8 199 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 COX14Q96I36 57 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 FAM46AQ96IP4 442 aaKnown RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF514Q96K75 400 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 FYTTD1Q96QD9 318 aaKnown RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 KATNB1Q9BVA0 655 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 SAP130Q9H0E3 1048 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 C11orf54Q9H0W9 315 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 OSGEPL1Q9H4B0 414 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 POLMQ9NP87 494 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 WASH6PQ9NQA3 447 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 CXXC1Q9P0U4 656 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 ITGB1BP2Q9UKP3 347 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 SF3B6Q9Y3B4 125 aaKnown RBP7.06□□□□□ -1.28
LIMA1-213ENST00000552720 PCDHGB2Q9Y5G2 931 aa7.06□□□□□ -1.28
LIMA1-213ENST00000552720 MYO9BQ13459 2157 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms