RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CYB5D2Q8WUJ1 264 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 SLC5A11Q8WWX8 675 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 DEDD2Q8WXF8 326 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 AP3S1Q92572 193 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 TM4SF18Q96CE8 201 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 TIFAQ96CG3 184 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 ZNF354BQ96LW1 612 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 F2RL3Q96RI0 385 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 ATF6BQ99941 703 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 TREX2Q9BQ50 279 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 EFCAB11Q9BUY7 163 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 HDHD5Q9BXW7 423 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 ANKRA2Q9H9E1 313 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 GALNT9Q9HCQ5 603 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 LHX9Q9NQ69 397 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 PRDM9Q9NQV7 894 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 STARD7Q9NQZ5 370 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 MRPL17Q9NRX2 175 aaKnown RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 DKK3Q9UBP4 350 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 LSM7Q9UK45 103 aaKnown RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 C2orf92A0A1B0GVN3 265 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 A0A1W2PRU2 124 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 C12orf71A8MTZ7 269 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 NEDD8-MDP1E9PL57 170 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 GTPBP1O00178 669 aaKnown RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 CACNB4O00305 520 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 HOXA2O43364 376 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 PROM1O43490 865 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 LANCL1O43813 399 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 ICMTO60725 284 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 HCN1O60741 890 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 SOD1P00441 154 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 TFPIP10646 304 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 CYP2A6P11509 494 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 ZNF30P17039 623 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 DDCP20711 480 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 IL12RB1P42701 662 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 AVPR1BP47901 424 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 SLC6A11P48066 632 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 MANFP55145 182 aaKnown RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 PCBP4P57723 403 aaKnown RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 SMIM11AP58511 58 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 ABATP80404 500 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 ALDH6A1Q02252 535 aaKnown RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 CNTN1Q12860 1018 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 COX10Q12887 443 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 ZNF155Q12901 538 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 FZD5Q13467 585 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 TNK1Q13470 666 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 RAB33AQ14088 237 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 LRRC32Q14392 662 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 SNAPC1Q16533 368 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 BTBD16Q32M84 506 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 C3orf38Q5JPI3 329 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 VASNQ6EMK4 673 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 HIST2H2AA3Q6FI13 130 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 SIGIRRQ6IA17 410 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 CD200R1LQ6Q8B3 271 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 NR2C2APQ86WQ0 139 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 FAM129CQ86XR2 697 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 PLCZ1Q86YW0 608 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 TCEAL8Q8IYN2 117 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 TBC1D19Q8N5T2 526 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 ARIH2OSQ8N7S6 290 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 DTX3Q8N9I9 347 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 ANKRD53Q8N9V6 530 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 DUSP18Q8NEJ0 188 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 OR4F15Q8NGB8 312 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 OR9A1PQ8NGU1 263 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 OR5H6Q8NGV6 325 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 SLC9A6Q92581 669 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 AP2M1Q96CW1 435 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 CLIP3Q96DZ5 547 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 RNFT2Q96EX2 444 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 ZC3HAV1LQ96H79 300 aaKnown RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 FOPNLQ96NB1 174 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 GFM1Q96RP9 751 aaKnown RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 ZNF649Q9BS31 505 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 ZSCAN5AQ9BUG6 496 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 TRAF4Q9BUZ4 470 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 SLC46A2Q9BY10 475 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 RNF32Q9H0A6 362 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 QRSL1Q9H0R6 528 aaKnown RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 RBFOX1Q9NWB1 397 aaKnown RBP5.11□□□□□ -1.59
LIMA1-212ENST00000552491 MCUBQ9NWR8 336 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 SEC14L3Q9UDX4 400 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 DYRK1BQ9Y463 629 aa5.11□□□□□ -1.59
LIMA1-212ENST00000552491 A0A0G2JN53 185 aa5.1□□□□□ -1.59
LIMA1-212ENST00000552491 A0A1W2PRQ8 180 aa5.1□□□□□ -1.59
LIMA1-212ENST00000552491 TMEM129A0AVI4 362 aa5.1□□□□□ -1.59
LIMA1-212ENST00000552491 WASH3PC4AMC7 463 aa5.1□□□□□ -1.59
LIMA1-212ENST00000552491 GRM6O15303 877 aa5.1□□□□□ -1.59
LIMA1-212ENST00000552491 ARHGEF9O43307 516 aa5.1□□□□□ -1.59
LIMA1-212ENST00000552491 LYRM1O43325 122 aa5.1□□□□□ -1.59
LIMA1-212ENST00000552491 FRS3O43559 492 aa5.1□□□□□ -1.59
LIMA1-212ENST00000552491 SLC28A2O43868 658 aa5.1□□□□□ -1.59
LIMA1-212ENST00000552491 TMPRSS11DO60235 418 aa5.1□□□□□ -1.59
LIMA1-212ENST00000552491 MYCP01106 439 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-212ENST00000552491 C1QBP02746 253 aa5.1□□□□□ -1.59
LIMA1-212ENST00000552491 NR2F6P10588 404 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms