RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 NKAIN4Q8IVV8 208 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 PRR18Q8N4B5 295 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 C12orf76Q8N812 135 aaPredicted RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 OR6M1Q8NGM8 313 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 OR10A6Q8NH74 314 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 FGF14Q92915 247 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 VOPP1Q96AW1 172 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 UPRTQ96BW1 309 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ITCHQ96J02 903 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 SEPT5Q99719 369 aaPredicted RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 AARSD1Q9BTE6 412 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 NTMT1Q9BV86 223 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ULBP1Q9BZM6 244 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 C11orf16Q9NQ32 467 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 EQTNQ9NQ60 294 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 THSD1Q9NS62 852 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 TDP1Q9NUW8 608 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 TAS2R13Q9NYV9 303 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 MGAT4AQ9UM21 535 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 SAMHD1Q9Y3Z3 626 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 C2orf78A6NCI8 922 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 H3BUI4 141 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 I6L893 689 aaPredicted RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 KCNK1O00180 336 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 LEFTY2O00292 366 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 SELENOFO60613 162 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PRAF2O60831 178 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 GRAP2O75791 330 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 CISD3P0C7P0 127 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 SMIM6P0DI80 62 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 SULT1A3P0DMM9 295 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 SULT1A4P0DMN0 295 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PRPS2P11908 318 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 CPEP16870 476 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PRKACGP22612 351 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 IGFBP4P22692 258 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 GABRR2P28476 465 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 HMGA2P52926 109 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 CDC42P60953 191 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 TFF2Q03403 129 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 FGL1Q08830 312 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 SIGLEC14Q08ET2 396 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 TDGQ13569 410 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 TRIM46Q7Z4K8 759 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 CAMKK1Q8N5S9 505 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 OR2C3Q8N628 320 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 C10orf53Q8N6V4 93 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 AGBL5Q8NDL9 886 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 OR4C15Q8NGM1 316 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 NETO1Q8TDF5 533 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 OTULINQ96BN8 352 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 KCTD12Q96CX2 325 aaKnown RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 ZBED6CLQ96FA7 236 aaPredicted RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 TRMT61AQ96FX7 289 aaKnown RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 TAAR9Q96RI9 348 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 SLC22A12Q96S37 553 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 KCNS3Q9BQ31 491 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 KCNK12Q9HB15 430 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 EXD2Q9NVH0 621 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 MRPS18AQ9NVS2 196 aaKnown RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 CLN6Q9NWW5 311 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 SLC25A37Q9NYZ2 338 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PURGQ9UJV8 347 aaKnown RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 ZNF490Q9ULM2 529 aaPredicted RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 A0A087WV62 115 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 ANKDD1BA6NHY2 528 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 SLC9B1P1A6NJY1 282 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 A8MX80 341 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 RGS14O43566 566 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 RAD1O60671 282 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PSIP1O75475 530 aaKnown RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 SCO1O75880 301 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 S100A8P05109 93 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PROS1P07225 676 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 STSP08842 583 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 IFI30P13284 250 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 GPX2P18283 190 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 RABIFP47224 123 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 CCT3P49368 545 aaKnown RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 CDKN2DP55273 166 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 NTHL1P78549 312 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 C1DQ13901 141 aaKnown RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 OR4D1Q15615 310 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 TMEM196Q5HYL7 178 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 RNF219Q5W0B1 726 aaPredicted RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 MRNIPQ6NTE8 343 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 SLC27A4Q6P1M0 643 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PARM1Q6UWI2 310 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 SCUBE3Q8IX30 993 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 NANOGP1Q8N7R0 232 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 ZNF321PQ8N8H1 164 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 MRPS31Q92665 395 aaKnown RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 FBXO32Q969P5 355 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 DACT3Q96B18 629 aaPredicted RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 CDKN2AIPNLQ96HQ2 116 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 DIRAS2Q96HU8 199 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 SLC38A2Q96QD8 506 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 NPAS1Q99742 590 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 GAL3ST1Q99999 423 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 THUMPD3Q9BV44 507 aaKnown RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms