RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	STMN3	Q9NZ72	180 aa		9.43	□□□□□ -0.9
CPSF7-221	ENST00000543545	TAGLN3	Q9UI15	199 aa		9.43	□□□□□ -0.9
CPSF7-221	ENST00000543545	ZNF223	Q9UK11	482 aa	Predicted RBP	9.43	□□□□□ -0.9
CPSF7-221	ENST00000543545	OR10H1	Q9Y4A9	318 aa		9.43	□□□□□ -0.9
CPSF7-221	ENST00000543545	HEMK1	Q9Y5R4	338 aa	Predicted RBP	9.43	□□□□□ -0.9
CPSF7-221	ENST00000543545	IGF2R	P11717	2491 aa		9.43	□□□□□ -0.9
CPSF7-221	ENST00000543545	CAPN14	A8MX76	684 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	FBP2	O00757	339 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	CLPS	P04118	112 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	HMGN2	P05204	90 aa	Known RBP	9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	KRT16	P08779	473 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	IFI6	P09912	130 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	ALOX5	P09917	674 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	ESRRA	P11474	423 aa	Predicted RBP	9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	MATN1	P21941	496 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	GABRA3	P34903	492 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	SOX18	P35713	384 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	CPA2	P48052	419 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	EMD	P50402	254 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	ANXA11	P50995	505 aa	Known RBP	9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	NR0B1	P51843	470 aa	Known RBP	9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	CASP9	P55211	416 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	NRG3	P56975	720 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	DCAF7	P61962	342 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	MXRA7	P84157	204 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	DUSP8	Q13202	625 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	GAB1	Q13480	694 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	MYBPC3	Q14896	1274 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	NNAT	Q16517	81 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	MEP1A	Q16819	746 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	ABHD17B	Q5VST6	288 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	C16orf47	Q6ZP98	133 aa	Predicted RBP	9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	LINC00696	Q6ZRV3	163 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	TRPM8	Q7Z2W7	1104 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	WDR53	Q7Z5U6	358 aa	Predicted RBP	9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	RETREG3	Q86VR2	466 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	APLF	Q8IW19	511 aa	Predicted RBP	9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	SLC44A2	Q8IWA5	706 aa	Predicted RBP	9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	TAGAP	Q8N103	731 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	DPP10	Q8N608	796 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	OR8K3	Q8NH51	312 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	PNPT1	Q8TCS8	783 aa	Known RBP	9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	GPR151	Q8TDV0	419 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	ADAMTS15	Q8TE58	950 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	EXTL1	Q92935	676 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	C16orf58	Q96GQ5	468 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	CRELD1	Q96HD1	420 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	NSL1	Q96IY1	281 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	SLC35G5	Q96KT7	338 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	ZNF354B	Q96LW1	612 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	THUMPD3	Q9BV44	507 aa	Known RBP	9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	ACTRT3	Q9BYD9	372 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	WWTR1	Q9GZV5	400 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	PAIP1	Q9H074	479 aa	Known RBP	9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	EFCAB1	Q9HAE3	211 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	TPT1P8	Q9HAU6	139 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	ARL8B	Q9NVJ2	186 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	SLAMF8	Q9P0V8	285 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	ABI3	Q9P2A4	366 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	ERVK-11	Q9UQG0	969 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	PCDHB14	Q9Y5E9	798 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	FER1L5	A0AVI2	2057 aa		9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	TPR	P12270	2363 aa	Known RBP	9.42	□□□□□ -0.9
CPSF7-221	ENST00000543545	CCT8L1P	A6NM43	557 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	EVPLL	A8MZ36	301 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	MKRN2OS	H3BPM6	223 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	CLIC1	O00299	241 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	ALPP	P05187	535 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	ZCCHC18	P0CG32	403 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	DRD5	P21918	477 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	KRT20	P35900	424 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	CRAT	P43155	626 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	PPIC	P45877	212 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	RFX3	P48380	749 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	ST13	P50502	369 aa	Known RBP	9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	NUDT2	P50583	147 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	MNAT1	P51948	309 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	SOX8	P57073	446 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	MLF1	P58340	268 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	RPS26	P62854	115 aa	Known RBP	9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	CAPRIN1	Q14444	709 aa	Known RBP	9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	KRT72	Q14CN4	511 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	EBP	Q15125	230 aa	Known RBP	9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	TRMT5	Q32P41	509 aa	Known RBP	9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	COQ5	Q5HYK3	327 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	CRB2	Q5IJ48	1285 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	ACER2	Q5QJU3	275 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	SAXO2	Q658L1	398 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	FAM91A1	Q658Y4	838 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	MFSD12	Q6NUT3	480 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	ZCCHC12	Q6PEW1	402 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	ISLR2	Q6UXK2	745 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	RNF130	Q86XS8	419 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	TMEM156	Q8N614	296 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	CDRT4	Q8N9R6	151 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	FDCSP	Q8NFU4	85 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	NUBPL	Q8TB37	319 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	SLC22A8	Q8TCC7	542 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	ZFP90	Q8TF47	636 aa		9.41	□□□□□ -0.9

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms