RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 FNDC7Q5VTL7 733 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 HLA-DQA1Q5Y7H0 255 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 HIST2H2BCQ6DN03 193 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 TMEM81Q6P7N7 255 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 SLC22A16Q86VW1 577 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 TICAM1Q8IUC6 712 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 FAM109AQ8N4B1 249 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 FAM13CQ8NE31 585 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 OR7G2Q8NG99 324 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 FAM57AQ8TBR7 257 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 SPPL2AQ8TCT8 520 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 TWIST2Q8WVJ9 160 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 HGDQ93099 445 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 HSPBAP1Q96EW2 488 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 PGM2Q96G03 612 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 LCORQ96JN0 433 aaPredicted RBP13.04□□□□□ -0.32
USP28-209ENST00000540925 VSTM2LQ96N03 204 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 PHF12Q96QT6 1004 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 DMRTA2Q96SC8 542 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 CCT7Q99832 543 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 ZNF703Q9H7S9 590 aaPredicted RBP13.04□□□□□ -0.32
USP28-209ENST00000540925 ANKRA2Q9H9E1 313 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 EML4Q9HC35 981 aaKnown RBP13.04□□□□□ -0.32
USP28-209ENST00000540925 GPR55Q9Y2T6 319 aaPredicted RBP13.04□□□□□ -0.32
USP28-209ENST00000540925 MEMO1Q9Y316 297 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 ACTL7BQ9Y614 415 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.04□□□□□ -0.32
USP28-209ENST00000540925 A0A087WV62 115 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 FRG2CA6NGY1 282 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 FAM166BA8MTA8 275 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 CAPN14A8MX76 684 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 ACOT7O00154 380 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 PLOD2O00469 737 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 PIP5K1BO14986 540 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 CTIFO43310 598 aaKnown RBP13.03□□□□□ -0.32
USP28-209ENST00000540925 RGS14O43566 566 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 SEC22BO75396 215 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 BCAS2O75934 225 aaPredicted RBP13.03□□□□□ -0.32
USP28-209ENST00000540925 ABCB1P08183 1280 aaPredicted RBP13.03□□□□□ -0.32
USP28-209ENST00000540925 CELA3AP09093 270 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 IFI6P09912 130 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 RFPL3SP0C7P2 107 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 LINC00032P0C843 101 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 SDC1P18827 310 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 MPIP34949 423 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 TMED10P49755 219 aaKnown RBP13.03□□□□□ -0.32
USP28-209ENST00000540925 NRG3P56975 720 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 DCAF7P61962 342 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 PDE7AQ13946 482 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 CEP85LQ5SZL2 805 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 PRAMEF20Q5VT98 475 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 MTFR2Q6P444 385 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 ARHGAP11AQ6P4F7 1023 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 LRIG3Q6UXM1 1119 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 RNF138Q8WVD3 245 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 KAT2AQ92830 837 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 AMDHD1Q96NU7 426 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 ANGPTL4Q9BY76 406 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 STMN4Q9H169 189 aaPredicted RBP13.03□□□□□ -0.32
USP28-209ENST00000540925 ZFP64Q9NPA5 681 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 PRODH2Q9UF12 536 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 BCAP29Q9UHQ4 241 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 ZDHHC2Q9UIJ5 367 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 ENTPD4Q9Y227 616 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 TMED5Q9Y3A6 229 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 LIPGQ9Y5X9 500 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 NCKAP5O14513 1909 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 ANKRD17O75179 2603 aaKnown RBP13.03□□□□□ -0.32
USP28-209ENST00000540925 DNAJC13O75165 2243 aa13.03□□□□□ -0.32
USP28-209ENST00000540925 E9PLN8 166 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 TP53I11O14683 189 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 TM9SF1O15321 606 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 BIRC5O15392 142 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 PPM1BO75688 479 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 SLITRK5O94991 958 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 LRATO95237 230 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 CHEK2O96017 543 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 ABOP16442 354 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 AGAP20933 346 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 PTGS2P35354 604 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 PTGDSP41222 190 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 FRKP42685 505 aaPredicted RBP13.02□□□□□ -0.33
USP28-209ENST00000540925 CASP6P55212 293 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 PLGLB1Q02325 96 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 NNATQ16517 81 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 TBCELQ5QJ74 424 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 SH2D4BQ5SQS7 431 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 BEND6Q5SZJ8 279 aaPredicted RBP13.02□□□□□ -0.33
USP28-209ENST00000540925 BICRALQ6AI39 1079 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 NPSR1Q6W5P4 371 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 RPTNQ6XPR3 784 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 TRILQ7L0X0 811 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 FAM9CQ8IZT9 166 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 OR2L13Q8N349 312 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 PHF10Q8WUB8 498 aaKnown RBP13.02□□□□□ -0.33
USP28-209ENST00000540925 PKNOX2Q96KN3 472 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 C3orf30Q96M34 536 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 VKORC1Q9BQB6 163 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 DEFB127Q9H1M4 99 aa13.02□□□□□ -0.33
USP28-209ENST00000540925 UBQLN3Q9H347 655 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms