RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 PIP5K1CO60331 668 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 SLC2A10O95528 541 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 HOXB2P14652 356 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 SSTR4P31391 388 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 LIMS1P48059 325 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 UGT2B15P54855 530 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 SNAPC1Q16533 368 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 SMARCD3Q6STE5 483 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 NKAIN4Q8IVV8 208 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 TBX5Q99593 518 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 RSPH9Q9H1X1 276 aaPredicted RBP15.92■□□□□ 0.14
USP28-208ENST00000540438 SFXN1Q9H9B4 322 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 ADAP2Q9NPF8 381 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 CARNS1A5YM72 827 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 ZAR1LA6NP61 321 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 RPN2P04844 631 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 RPLP0P05388 317 aaKnown RBP15.91■□□□□ 0.14
USP28-208ENST00000540438 CD40LGP29965 261 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 NTSP30990 170 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 RPL3P39023 403 aaKnown RBP15.91■□□□□ 0.14
USP28-208ENST00000540438 ADPRHP54922 357 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 ERVK-21P61565 698 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 CSTF1Q05048 431 aaKnown RBP15.91■□□□□ 0.14
USP28-208ENST00000540438 TAB1Q15750 504 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 DUSP6Q16828 381 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 UBE2UQ5VVX9 321 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 STEAP3Q658P3 488 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 ABHD17CQ6PCB6 329 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 PRICKLE2Q7Z3G6 844 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 APOBEC4Q8WW27 367 aaKnown RBP15.91■□□□□ 0.14
USP28-208ENST00000540438 GATAD2BQ8WXI9 593 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 DNAJA3Q96EY1 480 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 ZNF354BQ96LW1 612 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 ZNF607Q96SK3 696 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 WASH6PQ9NQA3 447 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 P2RX2Q9UBL9 471 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 HSPE1-MOB4S4R3N1 261 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 CXorf51AA0A1B0GTR3 108 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 P2RX6O15547 441 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 HCRTR1O43613 425 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 FHP07954 510 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 TYRP1P17643 537 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 TAS2R41P59536 307 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 NNATQ16517 81 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 ZNF311Q5JNZ3 666 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 SLC35F1Q5T1Q4 408 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 OR9Q1Q8NGQ5 310 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 METTL2AQ96IZ6 378 aaKnown RBP15.91■□□□□ 0.14
USP28-208ENST00000540438 TM9SF2Q99805 663 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 POLR2J2Q9GZM3 115 aaKnown RBP15.91■□□□□ 0.14
USP28-208ENST00000540438 TMEM165Q9HC07 324 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 OSGIN1Q9UJX0 560 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 SLCO1B1Q9Y6L6 691 aa15.91■□□□□ 0.14
USP28-208ENST00000540438 ATP6V1G1O75348 118 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 ZIC2O95409 532 aaPredicted RBP15.9■□□□□ 0.14
USP28-208ENST00000540438 PDX1P52945 283 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 ZNF91Q05481 1191 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 PCDH1Q08174 1060 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 TRMT12Q53H54 448 aaKnown RBP15.9■□□□□ 0.14
USP28-208ENST00000540438 AMER2Q8N7J2 671 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 NUP43Q8NFH3 380 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 GAS2L1Q99501 681 aaPredicted RBP15.9■□□□□ 0.14
USP28-208ENST00000540438 MALT1Q9UDY8 824 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 POU2F3Q9UKI9 436 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 PLD2O14939 933 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 CTSVO60911 334 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 HBQ1P09105 142 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 ZNF12P17014 697 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 TRIM23P36406 574 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 MAPK9P45984 424 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 ITPRIPL2Q3MIP1 535 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 CCDC80Q76M96 950 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 DEPDC4Q8N2C3 294 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 FAM46DQ8NEK8 389 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 CDS1Q92903 461 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 SPATA9Q9BWV2 254 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 DDX31Q9H8H2 851 aaKnown RBP15.9■□□□□ 0.14
USP28-208ENST00000540438 ZNF624Q9P2J8 865 aaPredicted RBP15.9■□□□□ 0.14
USP28-208ENST00000540438 ENTPD4Q9Y227 616 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 ASB4Q9Y574 426 aa15.9■□□□□ 0.14
USP28-208ENST00000540438 LRRC72A6NJI9 287 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 SERPINB7O75635 380 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 OSMP13725 252 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 SOX18P35713 384 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 RPS19P39019 145 aaKnown RBP15.89■□□□□ 0.13
USP28-208ENST00000540438 HNRNPFP52597 415 aaKnown RBP15.89■□□□□ 0.13
USP28-208ENST00000540438 UBE3AQ05086 875 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 AGERQ15109 404 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 PRRT3Q5FWE3 981 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 ATAT1Q5SQI0 421 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 KIAA1161Q6NSJ0 714 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 IKBIPQ70UQ0 350 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 C16orf62Q7Z3J2 963 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 GALNT12Q8IXK2 581 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 TBC1D19Q8N5T2 526 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 IL17RCQ8NAC3 791 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 PIK3R3Q92569 461 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 MTERF3Q96E29 417 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 OR7D2Q96RA2 312 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 NUAK2Q9H093 628 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms