RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 CEACAM5P06731 702 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 NAT1P18440 290 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 ATP5A1P25705 553 aaKnown RBP12.39□□□□□ -0.43
LDLR-203ENST00000535915 CERS1P27544 350 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 RAB8AP61006 207 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 C1DQ13901 141 aaKnown RBP12.39□□□□□ -0.43
LDLR-203ENST00000535915 NDUFA5Q16718 116 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 NDUFA9Q16795 377 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 FBXO46Q6PJ61 603 aaPredicted RBP12.39□□□□□ -0.43
LDLR-203ENST00000535915 PAQR6Q6TCH4 344 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 LINC00471Q8N535 108 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 NANOGP1Q8N7R0 232 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 OR2L5Q8NG80 312 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 OR2L3Q8NG85 312 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 SFXN5Q8TD22 340 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 C16orf58Q96GQ5 468 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 EQTNQ9NQ60 294 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 ANKMY1Q9P2S6 941 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 MKLN1Q9UL63 735 aa12.39□□□□□ -0.43
LDLR-203ENST00000535915 A0A0G2JPF8 293 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 HNRNPCL2B2RXH8 293 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 HNRNPCL3B7ZW38 293 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 APODP05090 189 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 EIF2S1P05198 315 aaKnown RBP12.38□□□□□ -0.43
LDLR-203ENST00000535915 CA3P07451 260 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 FHP07954 510 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 HBQ1P09105 142 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 HNRNPCL4P0DMR1 293 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 TCEA1P23193 301 aaKnown RBP12.38□□□□□ -0.43
LDLR-203ENST00000535915 GIPRP48546 466 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 CAMK2BQ13554 666 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 LRRC32Q14392 662 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 C2orf27AQ580R0 203 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 ACSM5Q6NUN0 579 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 CD300LDQ6UXZ3 194 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 MEX3DQ86XN8 651 aaKnown RBP12.38□□□□□ -0.43
LDLR-203ENST00000535915 MORN4Q8NDC4 146 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 JPH3Q8WXH2 748 aaPredicted RBP12.38□□□□□ -0.43
LDLR-203ENST00000535915 LRR1Q96L50 414 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 GPA33Q99795 319 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 POLDIP3Q9BY77 421 aaKnown RBP12.38□□□□□ -0.43
LDLR-203ENST00000535915 RACGAP1Q9H0H5 632 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 SIAEQ9HAT2 523 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 SPHK1Q9NYA1 384 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 CRNNQ9UBG3 495 aaPredicted RBP12.38□□□□□ -0.43
LDLR-203ENST00000535915 KCNE3Q9Y6H6 103 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 WWP2O00308 870 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 RGS5O15539 181 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 PTTG1O95997 202 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 TEAD1P28347 426 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 RPS19P39019 145 aaKnown RBP12.38□□□□□ -0.43
LDLR-203ENST00000535915 RPS21P63220 83 aaKnown RBP12.38□□□□□ -0.43
LDLR-203ENST00000535915 PRR5P85299 388 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 SF3B4Q15427 424 aaKnown RBP eCLIP12.38□□□□□ -0.432e-7■■■□□ 18.3
LDLR-203ENST00000535915 SYT14P1Q58G82 188 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 C1orf94Q6P1W5 598 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 CCDC190Q86UF4 302 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 FAM26EQ8N5C1 309 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 PROKR2Q8NFJ6 384 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 OR56A1Q8NGH5 318 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 PRR14Q9BWN1 585 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 PLA2G2FQ9BZM2 168 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 TRPV4Q9HBA0 871 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 SEC14L4Q9UDX3 406 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 KLHL3Q9UH77 587 aa12.38□□□□□ -0.43
LDLR-203ENST00000535915 TMA7Q9Y2S6 64 aaKnown RBP12.38□□□□□ -0.43
LDLR-203ENST00000535915 CASC3O15234 703 aaKnown RBP12.37□□□□□ -0.43
LDLR-203ENST00000535915 CSNK2A2P19784 350 aaPredicted RBP12.37□□□□□ -0.43
LDLR-203ENST00000535915 MAT2AP31153 395 aaKnown RBP12.37□□□□□ -0.43
LDLR-203ENST00000535915 HOXD11P31277 338 aaPredicted RBP12.37□□□□□ -0.43
LDLR-203ENST00000535915 AHRP35869 848 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 ETV6P41212 452 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 SEC13P55735 322 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 TAS2R41P59536 307 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 ABATP80404 500 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 SNAPC1Q16533 368 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 CARTPTQ16568 116 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 LIPKQ5VXJ0 399 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 MRM1Q6IN84 353 aaKnown RBP12.37□□□□□ -0.43
LDLR-203ENST00000535915 NUDT18Q6ZVK8 323 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 OR9Q1Q8NGQ5 310 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 OR14C36Q8NHC7 312 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 ARPC5LQ9BPX5 153 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 SLC30A2Q9BRI3 323 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 PINK1Q9BXM7 581 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 ANKRA2Q9H9E1 313 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 FBXL12Q9NXK8 326 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 STUB1Q9UNE7 303 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 A0A1W2PQU0 124 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 LOC110117498-PIK3R3F6TDL0 507 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 PRICKLE3O43900 615 aaPredicted RBP12.37□□□□□ -0.43
LDLR-203ENST00000535915 KCNK2O95069 426 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 RAB36O95755 333 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 SPNP16150 400 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 PEBP1P30086 187 aaKnown RBP12.37□□□□□ -0.43
LDLR-203ENST00000535915 MPIP34949 423 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 MC3RP41968 323 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 CRYBB2P43320 205 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 SOX9P48436 509 aa12.37□□□□□ -0.43
LDLR-203ENST00000535915 SMSP52788 366 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms