RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 OR6B1O95007 311 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 ANP32DO95626 131 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 SLC35G4P0C7Q5 338 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 RRASP10301 218 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 ETS1P14921 441 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 FNTAP49354 379 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 CCL11P51671 97 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 ARHGDIAP52565 204 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 MFAP2P55001 183 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 ABRAXAS2Q15018 415 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 HERC4Q5GLZ8 1057 aaPredicted RBP2.16□□□□□ -2.06
CD44-238ENST00000534296 ZNF506Q5JVG8 444 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 C9orf66Q5T8R8 295 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 RAET1GQ6H3X3 334 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 DPY19L2P2Q6ZN68 376 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 MOB2Q70IA6 237 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 LRRC70Q7Z2Q7 622 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 GPR142Q7Z601 462 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 YRDCQ86U90 279 aaKnown RBP2.16□□□□□ -2.06
CD44-238ENST00000534296 RPAINQ86UA6 219 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 ZSCAN30Q86W11 494 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 CARM1Q86X55 608 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 WDR49Q8IV35 697 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 C11orf53Q8IXP5 236 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 TYMSOSQ8TAI1 123 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 LHX4Q969G2 390 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 NABP1Q96AH0 204 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 TMEM45BQ96B21 275 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 ZBED6CLQ96FA7 236 aaPredicted RBP2.16□□□□□ -2.06
CD44-238ENST00000534296 ELMO2Q96JJ3 720 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 CNOT6LQ96LI5 555 aaKnown RBP2.16□□□□□ -2.06
CD44-238ENST00000534296 TMEM237Q96Q45 408 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 APOL2Q9BQE5 337 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 CBWD1Q9BRT8 395 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 APOOQ9BUR5 198 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 NLNQ9BYT8 704 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 IL1RL2Q9HB29 575 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 RAI14Q9P0K7 980 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 LHX3Q9UBR4 397 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 DNPEPQ9ULA0 475 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 DHRS7Q9Y394 339 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 TEX264Q9Y6I9 313 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 TMEM110-MUSTN1A8MSY1 372 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 FOXI3A8MTJ6 420 aaPredicted RBP2.15□□□□□ -2.07
CD44-238ENST00000534296 ZNF724A8MTY0 619 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 ZNF487B1APH4 448 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 ZNF354AO60765 605 aaPredicted RBP2.15□□□□□ -2.07
CD44-238ENST00000534296 B3GALNT1O75752 331 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 PRAMEF12O95522 483 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 FAM200BP0CF97 657 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 GSTT2P0CG29 244 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 GSTT2BP0CG30 244 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 TNNI3P19429 210 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 BCL3P20749 454 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 ATXN3P54252 364 aaPredicted RBP2.15□□□□□ -2.07
CD44-238ENST00000534296 RAG2P55895 527 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 BPIFB3P59826 476 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 OVGP1Q12889 678 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 SLC10A1Q14973 349 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 INAQ16352 499 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 ANKRD55Q3KP44 614 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 C14orf28Q4W4Y0 310 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 PARP10Q53GL7 1025 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 AGKQ53H12 422 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 ACER2Q5QJU3 275 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 LDLRAP1Q5SW96 308 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 ATAD3CQ5T2N8 411 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 FHL5Q5TD97 284 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 MARC1Q5VT66 337 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 MEDAGQ5VYS4 303 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 REG3GQ6UW15 175 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 TMEM26Q6ZUK4 368 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 STOX1Q6ZVD7 989 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 TMEM110Q86TL2 294 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 ITIH5Q86UX2 942 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 SLC22A16Q86VW1 577 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 MISPQ8IVT2 679 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 MCOLN2Q8IZK6 566 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 ZNF619Q8N2I2 560 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 RELL2Q8NC24 303 aaPredicted RBP2.15□□□□□ -2.07
CD44-238ENST00000534296 CHDHQ8NE62 594 aaPredicted RBP2.15□□□□□ -2.07
CD44-238ENST00000534296 WDR36Q8NI36 951 aaKnown RBP2.15□□□□□ -2.07
CD44-238ENST00000534296 TMEM186Q96B77 213 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 BIRC7Q96CA5 298 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 C14orf79Q96F83 325 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 CYYR1Q96J86 154 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 CPXM1Q96SM3 734 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 NDUFAF3Q9BU61 184 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 CARD6Q9BX69 1037 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 GSDMCQ9BYG8 508 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 NFKBIZQ9BYH8 718 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 NMNAT2Q9BZQ4 307 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 SIRPDQ9H106 197 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 CXXC4Q9H2H0 198 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 DPH5Q9H2P9 285 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 AMBNQ9NP70 447 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 ESM1Q9NQ30 184 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 TNFRSF19Q9NS68 423 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 RBM28Q9NW13 759 aaKnown RBP2.15□□□□□ -2.07
CD44-238ENST00000534296 CLEC5AQ9NY25 188 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms