RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 GUSBP11Q6P575 273 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 NHLRC1Q6VVB1 395 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 PACS1Q6VY07 963 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 RBMS3Q6XE24 437 aaKnown RBP3.39□□□□□ -1.87
CD44-235ENST00000532339 GBP6Q6ZN66 633 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 NOTCH2NLQ7Z3S9 236 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 PIWIL4Q7Z3Z4 852 aaKnown RBP3.39□□□□□ -1.87
CD44-235ENST00000532339 ARHGAP22Q7Z5H3 698 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 HOOK3Q86VS8 718 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 TUSC5Q8IXB3 177 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 BMPERQ8N8U9 685 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 MAPK1IP1LQ8NDC0 245 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 NPEPL1Q8NDH3 523 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 ST6GALNAC3Q8NDV1 305 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 RDM1Q8NG50 284 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 OR13J1Q8NGT2 312 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 SCFD1Q8WVM8 642 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 FCAMRQ8WWV6 532 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 PNPLA2Q96AD5 504 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 KIAA1143Q96AT1 154 aaPredicted RBP3.39□□□□□ -1.87
CD44-235ENST00000532339 ANKRD9Q96BM1 317 aaPredicted RBP3.39□□□□□ -1.87
CD44-235ENST00000532339 ZNF599Q96NL3 588 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 CYP2S1Q96SQ9 504 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 API5Q9BZZ5 524 aaKnown RBP3.39□□□□□ -1.87
CD44-235ENST00000532339 MMADHCQ9H3L0 296 aaPredicted RBP3.39□□□□□ -1.87
CD44-235ENST00000532339 RPF1Q9H9Y2 349 aaKnown RBP3.39□□□□□ -1.87
CD44-235ENST00000532339 CDH20Q9HBT6 801 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 SERINC1Q9NRX5 453 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 ASF1BQ9NVP2 202 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 GCNT4Q9P109 453 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 ARMCX1Q9P291 453 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 ARMCX3Q9UH62 379 aaPredicted RBP3.39□□□□□ -1.87
CD44-235ENST00000532339 PRR32B1ATL7 298 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 GAPDHSO14556 408 aaPredicted RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 PHF1O43189 567 aaPredicted RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 SELENOFO60613 162 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 BAG2O95816 211 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 SMIM18P0DKX4 95 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 PCP11498 1178 aaKnown RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 GNB3P16520 340 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 TCN2P20062 427 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 MARCKSP29966 332 aaPredicted RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 SLC6A6P31641 620 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 UGT1A3P35503 534 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 ETV5P41161 510 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 HNF4AP41235 474 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 KCNJ1P48048 391 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 NT5C2P49902 561 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 LUMP51884 338 aaPredicted RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 LAMTOR4Q0VGL1 99 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 ENPP2Q13822 863 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 CEBPEQ15744 281 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 NPTX1Q15818 432 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 CA9Q16790 459 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 FAM174BQ3ZCQ3 159 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 ODF2Q5BJF6 829 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 XKR3Q5GH77 459 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 DCAF10Q5QP82 559 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 FAM53AQ6NSI3 398 aaPredicted RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 ENPP7Q6UWV6 458 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 NCCRP1Q6ZVX7 275 aaPredicted RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 NIPA1Q7RTP0 329 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 COMMD2Q86X83 199 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 CACUL1Q86Y37 369 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 HPS6Q86YV9 775 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 UNC45BQ8IWX7 931 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 GPALPP1Q8IXQ4 340 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 KLHL7Q8IXQ5 586 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 IQCKQ8N0W5 287 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 UXS1Q8NBZ7 420 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 RNF149Q8NC42 400 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 WFDC11Q8NEX6 87 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 VANGL1Q8TAA9 524 aaPredicted RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 LRRC15Q8TF66 581 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 NAT6Q93015 286 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 SECISBP2Q96T21 854 aaKnown RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 CXCL16Q9H2A7 254 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 LHX5Q9H2C1 402 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 GPN2Q9H9Y4 310 aaPredicted RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 ZBTB20Q9HC78 741 aaPredicted RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 TUFT1Q9NNX1 390 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 ABCB8Q9NUT2 735 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 ZNF701Q9NV72 531 aaPredicted RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 ADPRHL2Q9NX46 363 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 CNIH4Q9P003 139 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 UXTQ9UBK9 157 aaPredicted RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 LEF1Q9UJU2 399 aaPredicted RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 ITGA11Q9UKX5 1188 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 JRKLQ9Y4A0 524 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 PRSS21Q9Y6M0 314 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 RYR2Q92736 4967 aa3.38□□□□□ -1.87
CD44-235ENST00000532339 TP53BP1Q12888 1972 aaPredicted RBP3.38□□□□□ -1.87
CD44-235ENST00000532339 DOCK9Q9BZ29 2069 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 OBSL1O75147 1896 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 ZSCAN5CA6NGD5 496 aaPredicted RBP3.37□□□□□ -1.87
CD44-235ENST00000532339 DUXAA6NLW8 204 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 D6RAR5 112 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 E9PI62 339 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 RAD1O60671 282 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms