RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ABCA4P78363 2273 aa10.36□□□□□ -0.75
VPS28-214ENST00000531032 A0A1B0GTL3 188 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 TUBAL3A6NHL2 446 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 GOLGA6L10A6NI86 522 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 GNB5O14775 395 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 SNPHO15079 494 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 ACOX3O15254 700 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 DIAPH2O60879 1101 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 GUCY1B2O75343 617 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 IL18BPO95998 194 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 ACTL6AO96019 429 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 RPS17P08708 135 aaKnown RBP10.35□□□□□ -0.75
VPS28-214ENST00000531032 RHOXF2BP0C7M4 288 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 EPXP11678 715 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 CSNK2A2P19784 350 aaPredicted RBP10.35□□□□□ -0.75
VPS28-214ENST00000531032 KLK2P20151 261 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 DNASE1P24855 282 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 TACR1P25103 407 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 CTSSP25774 331 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 OPRM1P35372 400 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 PTGDSP41222 190 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 NAGLUP54802 743 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 SORDQ00796 357 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 GALNT1Q10472 559 aaPredicted RBP10.35□□□□□ -0.75
VPS28-214ENST00000531032 SNTA1Q13424 505 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 TOMM20Q15388 145 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 NNATQ16517 81 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 TSNAXIP1Q2TAA8 658 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 SLC30A6Q6NXT4 461 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 FAM111BQ6SJ93 734 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 ANGPTL8Q6UXH0 198 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 PAMR1Q6UXH9 720 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 NUP54Q7Z3B4 507 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 MILR1Q7Z6M3 343 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 KIF18BQ86Y91 864 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 MMP21Q8N119 569 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 NOA1Q8NC60 698 aaKnown RBP10.35□□□□□ -0.75
VPS28-214ENST00000531032 FAM83FQ8NEG4 500 aaPredicted RBP10.35□□□□□ -0.75
VPS28-214ENST00000531032 OR4F6Q8NGB9 312 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 GOT1L1Q8NHS2 421 aaPredicted RBP10.35□□□□□ -0.75
VPS28-214ENST00000531032 ZPLD1Q8TCW7 415 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 MBD6Q96DN6 1003 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 OMA1Q96E52 524 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 TRIB1Q96RU8 372 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 OSBPL11Q9BXB4 747 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 ITPAQ9BY32 194 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 BRINP2Q9C0B6 783 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 ELOVL6Q9H5J4 265 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 BRF2Q9HAW0 419 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 FARSBQ9NSD9 589 aaKnown RBP10.35□□□□□ -0.75
VPS28-214ENST00000531032 SLC12A4Q9UP95 1085 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 ACANP16112 2415 aa10.35□□□□□ -0.75
VPS28-214ENST00000531032 EEF1E1-BLOC1S5C9J1V9 151 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 EEF1E1O43324 174 aaKnown RBP10.34□□□□□ -0.75
VPS28-214ENST00000531032 ICOSLGO75144 302 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 SMIM24O75264 130 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 ERAL1O75616 437 aaKnown RBP10.34□□□□□ -0.75
VPS28-214ENST00000531032 GOSR1O95249 250 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 CBX7O95931 251 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 OTCP00480 354 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 PDYNP01213 254 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 COL6A2P12110 1019 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 CPN1P15169 458 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 FEN1P39748 380 aaKnown RBP10.34□□□□□ -0.75
VPS28-214ENST00000531032 DCAF7P61962 342 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 PPP2R2AP63151 447 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 DUSP2Q05923 314 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 PLCXD2Q0VAA5 305 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 RCAN2Q14206 197 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 EXOSC7Q15024 291 aaKnown RBP10.34□□□□□ -0.75
VPS28-214ENST00000531032 GLE1Q53GS7 698 aaKnown RBP10.34□□□□□ -0.75
VPS28-214ENST00000531032 SGO1Q5FBB7 561 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 DESI1Q6ICB0 168 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 LETMD1Q6P1Q0 360 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 CAMKMTQ7Z624 323 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 ADGRE4PQ86SQ3 457 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 YRDCQ86U90 279 aaKnown RBP10.34□□□□□ -0.75
VPS28-214ENST00000531032 CEP112Q8N8E3 955 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 C9orf106Q8NAJ2 232 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 SIMC1Q8NDZ2 872 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 ZNF483Q8TF39 744 aaPredicted RBP10.34□□□□□ -0.75
VPS28-214ENST00000531032 TM4SF18Q96CE8 201 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 KLHL29Q96CT2 875 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 LCORQ96JN0 433 aaPredicted RBP10.34□□□□□ -0.75
VPS28-214ENST00000531032 ZNF681Q96N22 645 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 NODALQ96S42 347 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 MRPL57Q9BQC6 102 aaKnown RBP10.34□□□□□ -0.75
VPS28-214ENST00000531032 C1QTNF3Q9BXJ4 246 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 OR2B2Q9GZK3 357 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 MRPL46Q9H2W6 279 aaKnown RBP10.34□□□□□ -0.75
VPS28-214ENST00000531032 EPB41L4BQ9H329 900 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 CDC42EP4Q9H3Q1 356 aaKnown RBP10.34□□□□□ -0.75
VPS28-214ENST00000531032 GALNT9Q9HCQ5 603 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 DLL4Q9NR61 685 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 BCAP29Q9UHQ4 241 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 SNX6Q9UNH7 406 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 EXO1Q9UQ84 846 aaKnown RBP10.34□□□□□ -0.75
VPS28-214ENST00000531032 PLLPQ9Y342 182 aa10.34□□□□□ -0.75
VPS28-214ENST00000531032 NIPBLQ6KC79 2804 aaeCLIP10.34□□□□□ -0.75
VPS28-214ENST00000531032 MPDZO75970 2070 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms