RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 C6orf163Q5TEZ5 329 aa14.23□□□□□ -0.13
LSM1-203ENST00000520755 SIRT6Q8N6T7 355 aa14.23□□□□□ -0.13
LSM1-203ENST00000520755 MORN4Q8NDC4 146 aa14.23□□□□□ -0.13
LSM1-203ENST00000520755 SLC2A12Q8TD20 617 aa14.23□□□□□ -0.13
LSM1-203ENST00000520755 SFXN5Q8TD22 340 aa14.23□□□□□ -0.13
LSM1-203ENST00000520755 GIMAP5Q96F15 307 aa14.23□□□□□ -0.13
LSM1-203ENST00000520755 VMP1Q96GC9 406 aa14.23□□□□□ -0.13
LSM1-203ENST00000520755 FBXL20Q96IG2 436 aa14.23□□□□□ -0.13
LSM1-203ENST00000520755 CPPED1Q9BRF8 314 aaPredicted RBP14.23□□□□□ -0.13
LSM1-203ENST00000520755 NUDT9Q9BW91 350 aa14.23□□□□□ -0.13
LSM1-203ENST00000520755 SERHL2Q9H4I8 314 aa14.23□□□□□ -0.13
LSM1-203ENST00000520755 IKZF5Q9H5V7 419 aa14.23□□□□□ -0.13
LSM1-203ENST00000520755 PTGFRNQ9P2B2 879 aa14.23□□□□□ -0.13
LSM1-203ENST00000520755 PPIEQ9UNP9 301 aaKnown RBP14.23□□□□□ -0.13
LSM1-203ENST00000520755 ITPR1Q14643 2758 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 EPG5Q9HCE0 2579 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 A0A087WV62 115 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 TRBV11-1A0A0K0K1C0 115 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 ERVH48-1M5A8F1 160 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 ERN1O75460 977 aaKnown RBP14.22□□□□□ -0.13
LSM1-203ENST00000520755 CEACAM4O75871 244 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 SLITRK5O94991 958 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 KCNH1O95259 989 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 ESRRAP11474 423 aaPredicted RBP14.22□□□□□ -0.13
LSM1-203ENST00000520755 CALB2P22676 271 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 CPOXP36551 454 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 CLCN2P51788 898 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 MVDP53602 400 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 SOX8P57073 446 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 SAXO2Q658L1 398 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 JMJD6Q6NYC1 403 aaPredicted RBP14.22□□□□□ -0.13
LSM1-203ENST00000520755 HACD2Q6Y1H2 254 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 RINLQ6ZS11 566 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 C10orf111Q8N326 155 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 ZNF615Q8N8J6 731 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 APCDD1LQ8NCL9 501 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 OR1N1Q8NGS0 311 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 ELP5Q8TE02 316 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 ZFP90Q8TF47 636 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 LRRC58Q96CX6 371 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 ABHD17AQ96GS6 310 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 SENP5Q96HI0 755 aaPredicted RBP14.22□□□□□ -0.13
LSM1-203ENST00000520755 MAGED4Q96JG8 741 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 CGREF1Q99674 301 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 GPATCH1Q9BRR8 931 aaKnown RBP14.22□□□□□ -0.13
LSM1-203ENST00000520755 SLC35A5Q9BS91 424 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 ZCCHC3Q9NUD5 404 aaKnown RBP14.22□□□□□ -0.13
LSM1-203ENST00000520755 GPATCH2Q9NW75 528 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 COPS7AQ9UBW8 275 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 VPS4AQ9UN37 437 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 PCDHGB4Q9UN71 923 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 C19orf53Q9UNZ5 99 aaPredicted RBP14.22□□□□□ -0.13
LSM1-203ENST00000520755 DTX4Q9Y2E6 619 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 SNX8Q9Y5X2 465 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 ATMQ13315 3056 aa14.22□□□□□ -0.13
LSM1-203ENST00000520755 EBAG9O00559 213 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 EMC8O43402 210 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 UQCRC2P22695 453 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 CCT3P49368 545 aaKnown RBP14.21□□□□□ -0.13
LSM1-203ENST00000520755 SLC37A1P57057 533 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 EXOSC6Q5RKV6 272 aaKnown RBP14.21□□□□□ -0.13
LSM1-203ENST00000520755 AGAP7PQ5VUJ5 663 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 B3GNTL1Q67FW5 361 aaPredicted RBP14.21□□□□□ -0.13
LSM1-203ENST00000520755 FCRLBQ6BAA4 426 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 ZNF621Q6ZSS3 439 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 EXD3Q8N9H8 876 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 PCYOX1LQ8NBM8 494 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 RBM15BQ8NDT2 890 aaKnown RBP14.21□□□□□ -0.13
LSM1-203ENST00000520755 OR52R1Q8NGF1 315 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 PSMF1Q92530 271 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 ROPN1LQ96C74 230 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 SLC7A6OSQ96CW6 309 aaPredicted RBP14.21□□□□□ -0.13
LSM1-203ENST00000520755 NEURL3Q96EH8 262 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 ART5Q96L15 291 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 ANKRD27Q96NW4 1050 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 AGAP4Q96P64 663 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 DEFB126Q9BYW3 111 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 SEMA4CQ9C0C4 833 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 EFCAB1Q9HAE3 211 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 DDX18Q9NVP1 670 aaKnown RBP14.21□□□□□ -0.13
LSM1-203ENST00000520755 GMEB1Q9Y692 573 aa14.21□□□□□ -0.13
LSM1-203ENST00000520755 NBEAQ8NFP9 2946 aa14.21□□□□□ -0.14
LSM1-203ENST00000520755 KMT2BQ9UMN6 2715 aaPredicted RBP14.2□□□□□ -0.14
LSM1-203ENST00000520755 PRKNO60260 465 aaPredicted RBP14.2□□□□□ -0.14
LSM1-203ENST00000520755 UNC5CO95185 931 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 ANP32DO95626 131 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 ALPPP05187 535 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 SLC6A2P23975 617 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 EMDP50402 254 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 MTPNP58546 118 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 RPS26P62854 115 aaKnown RBP14.2□□□□□ -0.14
LSM1-203ENST00000520755 SLC25A3Q00325 362 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 TP53BP2Q13625 1128 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 LY6DQ14210 128 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 RUNDC3AQ59EK9 446 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 MFSD12Q6NUT3 480 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 HSDL2Q6YN16 418 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 RNF111Q6ZNA4 994 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 LINC00696Q6ZRV3 163 aa14.2□□□□□ -0.14
LSM1-203ENST00000520755 SZRD1Q7Z422 152 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms