RNA–Protein interactions for RNA: ENST00000513341.5

PDLIM5-218, Transcript of PDZ and LIM domain 5, humanhuman

TSL 3

Gene PDLIM5, Length 794 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-218ENST00000513341 RGS7BPQ6MZT1 257 aaPredicted RBP3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 LRRC8BQ6P9F7 803 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 TTC23LQ6PF05 361 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 TRILQ7L0X0 811 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 OTOAQ7RTW8 1153 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 GLT6D1Q7Z4J2 308 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 ANKRD37Q7Z713 158 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 GPALPP1Q8IXQ4 340 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 FBXW8Q8N3Y1 598 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 RAB42Q8N4Z0 105 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 NIPA2Q8N8Q9 360 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 AMER3Q8N944 861 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 LINC01555Q8NAE3 123 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 MLKLQ8NB16 471 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 PPHLN1Q8NEY8 458 aaKnown RBP3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 RP9Q8TA86 221 aaKnown RBP3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 LINC01560Q8TB33 94 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 RAD51AP1Q96B01 352 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 ZMYND19Q96E35 227 aaPredicted RBP3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 CABS1Q96KC9 395 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 SGCZQ96LD1 299 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 C10orf90Q96M02 699 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 ZNF830Q96NB3 372 aaPredicted RBP3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 SMC6Q96SB8 1091 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 NRTNQ99748 197 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 FICDQ9BVA6 458 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 RAB11FIP5Q9BXF6 653 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 BEX2Q9BXY8 128 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 KRTAP4-3Q9BYR4 195 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 DEFB126Q9BYW3 111 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 TRIM5Q9C035 493 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 VN1R1Q9GZP7 353 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 DRC3Q9H069 523 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 GLOD4Q9HC38 313 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 TRIM36Q9NQ86 728 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 YAE1D1Q9NRH1 226 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 FAM153AQ9UHL3 310 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 CRLS1Q9UJA2 301 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 ACAD8Q9UKU7 415 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 KLHL20Q9Y2M5 609 aa3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 TDRKHQ9Y2W6 561 aaKnown RBP3.35□□□□□ -1.87
PDLIM5-218ENST00000513341 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.35□□□□□ -1.874e-6■□□□□ 9.7
PDLIM5-218ENST00000513341 USF3Q68DE3 2245 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 LOC105369274A0A096LPK9 316 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 IGHV3-20A0A0C4DH32 117 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 TRBV5-4A0A0C4DH59 114 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 LOC102723532A0A0G2JNH3 316 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 A0A0J9YVX5 310 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 A0A1W2PPR1 153 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 OR2A25A4D2G3 310 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 MAGEB17A8MXT2 336 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 ZNF487B1APH4 448 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 H0YGG7 62 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 H7C0S8 307 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 M0R3H8 397 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 RAB27BO00194 218 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 RGS10O43665 173 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 RRP9O43818 475 aaKnown RBP3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 MFSD11O43934 449 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 PIP5K1CO60331 668 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 GLSO94925 669 aaPredicted RBP3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 GAS8-AS1O95177 125 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 NSA2O95478 260 aaKnown RBP3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 SLC4A1P02730 911 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 FTH1P02794 183 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 EIF2S1P05198 315 aaKnown RBP3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 HSP90AA1P07900 732 aaKnown RBP3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 CNR1P21554 472 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 PTDSS1P48651 473 aaKnown RBP3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 EFNA3P52797 238 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 ARF3P61204 181 aaPredicted RBP3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 PPIAP62937 165 aaKnown RBP3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 TBL3Q12788 808 aaKnown RBP3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 ZBTB17Q13105 803 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 TNK1Q13470 666 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 DPYSL3Q14195 570 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 GRB7Q14451 532 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 ITIH4Q14624 930 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 PDK1Q15118 436 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 NSDHLQ15738 373 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 SLC1A5Q15758 541 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 PDLIM3Q53GG5 364 aaPredicted RBP3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 SFT2D3Q587I9 215 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 PAPD4Q6PIY7 484 aaKnown RBP3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 PLEKHM3Q6ZWE6 761 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 BZW1Q7L1Q6 419 aaKnown RBP3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 MDGA2Q7Z553 956 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 VSIG1Q86XK7 387 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 LACC1Q8IV20 430 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 OR4N4Q8N0Y3 316 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 CYP4Z2PQ8N1L4 340 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 TMEM156Q8N614 296 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 RELL2Q8NC24 303 aaPredicted RBP3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 KCTD6Q8NC69 237 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 OR2L3Q8NG85 312 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 OR4K2Q8NGD2 314 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 OR5M9Q8NGP3 310 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 OR2A1Q8NGT9 310 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 OR51Q1Q8NH59 317 aa3.34□□□□□ -1.87
PDLIM5-218ENST00000513341 SPATA22Q8NHS9 363 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms