RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 SLC9A5Q14940 896 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 NCF4Q15080 339 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 GSG1Q2KHT4 349 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 PRRT3Q5FWE3 981 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 CTSL3PQ5NE16 218 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 C19orf48Q6RUI8 117 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 RPTNQ6XPR3 784 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 NUDT13Q86X67 352 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 MMP21Q8N119 569 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 L3MBTL4Q8NA19 623 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 DENND6BQ8NEG7 585 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 OR52I1Q8NGK6 324 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 OR5M1Q8NGP8 315 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 OR1S1Q8NH92 325 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 CD200R1Q8TD46 325 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 RAB8BQ92930 207 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 PPP3R2Q96LZ3 170 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 WDFY2Q96P53 400 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 PFDN5Q99471 154 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 FUZQ9BT04 418 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 DERL2Q9GZP9 239 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 CCDC86Q9H6F5 360 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 ISG20L2Q9H9L3 353 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 CD93Q9NPY3 652 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 PLCXD1Q9NUJ7 323 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 ACER3Q9NUN7 267 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 LYARQ9NX58 379 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 A0A0D9SEW6 157 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 ZNF705EA8MWA4 302 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 A8MXK9 166 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 CACNB4O00305 520 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 MANBAO00462 879 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 SELENOFO60613 162 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 PRKRAO75569 313 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 ATXN1LP0C7T5 689 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 NFYAP23511 347 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 MST1P26927 711 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 AHRP35869 848 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 PPT1P50897 306 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 UBE2IP63279 158 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 PCBP2Q15366 365 aaKnown RBP eCLIP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 RPE65Q16518 533 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 MANEAQ5SRI9 462 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 MANEALQ5VSG8 457 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 GLT6D1Q7Z4J2 308 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 LRRTM1Q86UE6 522 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 RHEBL1Q8TAI7 183 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 NT5C3BQ969T7 300 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 SCMH1Q96GD3 660 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 MEGF10Q96KG7 1140 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 FAM193BQ96PV7 902 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 ZNF382Q96SR6 550 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 PAPOLGQ9BWT3 736 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 MND1Q9BWT6 205 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 NUSAP1Q9BXS6 441 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 GABARAPL3Q9BY60 117 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 KCNH6Q9H252 994 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 DPAGT1Q9H3H5 408 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 KLF15Q9UIH9 416 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 AP1M2Q9Y6Q5 423 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 STRCP1A6NGW2 1772 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 SPAG17Q6Q759 2223 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 MEIS3P1A6NDR6 274 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 GLTPD2A6NH11 291 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 KRBOX1C9JBD0 128 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 D6RAR5 112 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 ZNF593O00488 134 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 WNT9AO14904 365 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 AGPAT2O15120 278 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 CHST10O43529 356 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 BNIP3LO60238 219 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 EIF1BO60739 113 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 FZD7O75084 574 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 KLHL18O94889 574 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 IL1AP01583 271 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 PKMP14618 531 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 G0S2P27469 103 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 SOAT1P35610 550 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 ACVR1BP36896 505 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 EIF1P41567 113 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 ADCYAP1R1P41586 468 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 SLC16A1P53985 500 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 CLDN12P56749 244 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 PSMA6P60900 246 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 STXBP1P61764 594 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 SNTB2Q13425 540 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 TAF1AQ15573 450 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 HECTD3Q5T447 861 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 FAM151BQ6UXP7 276 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 UNQ6494/PRO21346Q6UXR6 183 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 LINGO4Q6UY18 593 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 SSX6Q7RTT6 188 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 PODNQ7Z5L7 613 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 DBF4BQ8NFT6 615 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 TEX47Q8TBZ9 253 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 CERKQ8TCT0 537 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 SNX33Q8WV41 574 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 CIDECQ96AQ7 238 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 C10orf90Q96M02 699 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 ZNF75AQ96N20 296 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms