RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 PLOD2O00469 737 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 PLOD3O60568 738 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 WISP1O95388 367 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 CBX6O95503 412 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 C1QCP02747 245 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 CLPSP04118 112 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 IGKV3-11P04433 115 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 ITGAMP11215 1152 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 UQCRC2P22695 453 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 ITGA3P26006 1051 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 TRPC1P48995 793 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 CLCN2P51788 898 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 RRADP55042 308 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 PRR5P85299 388 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 ZNF155Q12901 538 aaPredicted RBP15.97■□□□□ 0.15
LIME1-208ENST00000493265 RAPSNQ13702 412 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 CAPRIN1Q14444 709 aaKnown RBP15.97■□□□□ 0.15
LIME1-208ENST00000493265 HSDL2Q6YN16 418 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 WDR53Q7Z5U6 358 aaPredicted RBP15.97■□□□□ 0.15
LIME1-208ENST00000493265 DHDDSQ86SQ9 333 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 OR2L13Q8N349 312 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 TRIML2Q8N7C3 387 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 EXD3Q8N9H8 876 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 APCDD1LQ8NCL9 501 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 OR7G1Q8NGA0 311 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 M1APQ8TC57 530 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 PNPT1Q8TCS8 783 aaKnown RBP15.97■□□□□ 0.15
LIME1-208ENST00000493265 OTUB1Q96FW1 271 aaPredicted RBP15.97■□□□□ 0.15
LIME1-208ENST00000493265 AURKBQ96GD4 344 aaPredicted RBP15.97■□□□□ 0.15
LIME1-208ENST00000493265 THOC3Q96J01 351 aaKnown RBP15.97■□□□□ 0.15
LIME1-208ENST00000493265 DEFB126Q9BYW3 111 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 LIN28AQ9H9Z2 209 aaKnown RBP15.97■□□□□ 0.15
LIME1-208ENST00000493265 ATP13A2Q9NQ11 1180 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.97■□□□□ 0.15
LIME1-208ENST00000493265 MAP10Q9P2G4 905 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.97■□□□□ 0.15
LIME1-208ENST00000493265 TAGLN3Q9UI15 199 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 ZNF639Q9UID6 485 aa15.97■□□□□ 0.15
LIME1-208ENST00000493265 ZNF223Q9UK11 482 aaPredicted RBP15.97■□□□□ 0.15
LIME1-208ENST00000493265 C19orf53Q9UNZ5 99 aaPredicted RBP15.97■□□□□ 0.15
LIME1-208ENST00000493265 HEMK1Q9Y5R4 338 aaPredicted RBP15.97■□□□□ 0.15
LIME1-208ENST00000493265 A0A087WV62 115 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 A0A096LPI6 279 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 CCT8L1PA6NM43 557 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 PRAMEF2O60811 474 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 COQ9O75208 318 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 SLITRK5O94991 958 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 ICAM2P13598 275 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 PRDX6P30041 224 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 GPR143P51810 404 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 SLC37A1P57057 533 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 RPS26P62854 115 aaKnown RBP15.96■□□□□ 0.15
LIME1-208ENST00000493265 AIMP2Q13155 320 aaKnown RBP15.96■□□□□ 0.15
LIME1-208ENST00000493265 NNATQ16517 81 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 CRTC2Q53ET0 693 aaPredicted RBP15.96■□□□□ 0.15
LIME1-208ENST00000493265 FCRLBQ6BAA4 426 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 SLC29A4Q7RTT9 530 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 C6orf120Q7Z4R8 191 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 C9orf40Q8IXQ3 194 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 SIRT6Q8N6T7 355 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 ZNF615Q8N8J6 731 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 PCYOX1LQ8NBM8 494 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 OR56A1Q8NGH5 318 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 GOT1L1Q8NHS2 421 aaPredicted RBP15.96■□□□□ 0.15
LIME1-208ENST00000493265 C16orf52Q8NHV5 167 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 PSMA8Q8TAA3 256 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 SFXN5Q8TD22 340 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 JADE3Q92613 823 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 C16orf58Q96GQ5 468 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 ING2Q9H160 280 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 MMP25Q9NPA2 562 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 DTX4Q9Y2E6 619 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 PCDHB14Q9Y5E9 798 aa15.96■□□□□ 0.15
LIME1-208ENST00000493265 ERN1O75460 977 aaKnown RBP15.95■□□□□ 0.14
LIME1-208ENST00000493265 BCAS2O75934 225 aaPredicted RBP15.95■□□□□ 0.14
LIME1-208ENST00000493265 DNAJB5O75953 348 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 UBOX5O94941 541 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 SERPINA7P05543 415 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 ESRRAP11474 423 aaPredicted RBP15.95■□□□□ 0.14
LIME1-208ENST00000493265 EMDP50402 254 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 ST13P50502 369 aaKnown RBP15.95■□□□□ 0.14
LIME1-208ENST00000493265 NUDT2P50583 147 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 CCL11P51671 97 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 RNF4P78317 190 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 MXRA7P84157 204 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 ART3Q13508 389 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 LASP1Q14847 261 aaKnown RBP15.95■□□□□ 0.14
LIME1-208ENST00000493265 KRT72Q14CN4 511 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 LINC00303Q3SY05 128 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 IRAK1BP1Q5VVH5 260 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 HLA-DQA1Q5Y7H0 255 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 FAM91A1Q658Y4 838 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 TMEM64Q6YI46 380 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 C16orf47Q6ZP98 133 aaPredicted RBP15.95■□□□□ 0.14
LIME1-208ENST00000493265 DPP10Q8N608 796 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 TMEM102Q8N9M5 508 aaPredicted RBP15.95■□□□□ 0.14
LIME1-208ENST00000493265 BRIX1Q8TDN6 353 aaKnown RBP15.95■□□□□ 0.14
LIME1-208ENST00000493265 ELP5Q8TE02 316 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 EXTL1Q92935 676 aa15.95■□□□□ 0.14
LIME1-208ENST00000493265 MOAP1Q96BY2 351 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms