RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ZNF385BQ569K4 471 aa16.65■□□□□ 0.26
COL9A3-214ENST00000490398 NPSR1Q6W5P4 371 aa16.65■□□□□ 0.26
COL9A3-214ENST00000490398 GK5Q6ZS86 529 aa16.65■□□□□ 0.26
COL9A3-214ENST00000490398 MAMDC2Q7Z304 686 aaPredicted RBP16.65■□□□□ 0.26
COL9A3-214ENST00000490398 NUDT8Q8WV74 236 aa16.65■□□□□ 0.26
COL9A3-214ENST00000490398 ITLN2Q8WWU7 325 aaPredicted RBP16.65■□□□□ 0.26
COL9A3-214ENST00000490398 TSSK3Q96PN8 268 aa16.65■□□□□ 0.26
COL9A3-214ENST00000490398 BBS4Q96RK4 519 aa16.65■□□□□ 0.26
COL9A3-214ENST00000490398 C20orf27Q9GZN8 174 aa16.65■□□□□ 0.26
COL9A3-214ENST00000490398 GLIPR2Q9H4G4 154 aa16.65■□□□□ 0.26
COL9A3-214ENST00000490398 SENP1Q9P0U3 644 aa16.65■□□□□ 0.26
COL9A3-214ENST00000490398 ATP6AP2A0A1C7CYW4 349 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 AKAP10O43572 662 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 ATP6AP2O75787 350 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 ABCB1P08183 1280 aaPredicted RBP16.64■□□□□ 0.25
COL9A3-214ENST00000490398 DHRS4L1P0CG22 281 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 PTGS2P35354 604 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 GSTM5P46439 218 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 PER3P56645 1201 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 CORO7P57737 925 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 KCNJ2P63252 427 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 RPS6KA2Q15349 733 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 HYAL4Q2M3T9 481 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 XKR7Q5GH72 579 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 EMC4Q5J8M3 183 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 BNC2Q6ZN30 1099 aaPredicted RBP16.64■□□□□ 0.25
COL9A3-214ENST00000490398 NUDCD3Q8IVD9 361 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 C17orf47Q8NEP4 570 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 SPPL2AQ8TCT8 520 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 DIO2Q92813 273 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 HGDQ93099 445 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 NTNG2Q96CW9 530 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 LCORQ96JN0 433 aaPredicted RBP16.64■□□□□ 0.25
COL9A3-214ENST00000490398 NODALQ96S42 347 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 EML4Q9HC35 981 aaKnown RBP16.64■□□□□ 0.25
COL9A3-214ENST00000490398 MIEF1Q9NQG6 463 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 TAS2R7Q9NYW3 318 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 GPR55Q9Y2T6 319 aaPredicted RBP16.64■□□□□ 0.25
COL9A3-214ENST00000490398 CENPEQ02224 2701 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 MAST4O15021 2626 aa16.64■□□□□ 0.25
COL9A3-214ENST00000490398 TRIM3O75382 744 aaPredicted RBP16.63■□□□□ 0.25
COL9A3-214ENST00000490398 SKAP2O75563 359 aaPredicted RBP16.63■□□□□ 0.25
COL9A3-214ENST00000490398 TPOP07202 933 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 CT45A8P0DMV1 189 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 CT45A9P0DMV2 189 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 MC3RP41968 323 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 NCBP2P52298 156 aaKnown RBP eCLIP16.63■□□□□ 0.25
COL9A3-214ENST00000490398 CHI3L2Q15782 390 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.63■□□□□ 0.25
COL9A3-214ENST00000490398 CT45A2Q5DJT8 189 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 BEND6Q5SZJ8 279 aaPredicted RBP16.63■□□□□ 0.25
COL9A3-214ENST00000490398 FNDC7Q5VTL7 733 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 ZNF787Q6DD87 383 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 TMEM107Q6UX40 140 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 CD163Q86VB7 1156 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 SLC22A16Q86VW1 577 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 FAM9CQ8IZT9 166 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 FAM109AQ8N4B1 249 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 RPRMLQ8N4K4 120 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 FAM57AQ8TBR7 257 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 CIDECQ96AQ7 238 aaPredicted RBP16.63■□□□□ 0.25
COL9A3-214ENST00000490398 OMA1Q96E52 524 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 VSTM2LQ96N03 204 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 AMDHD1Q96NU7 426 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 ZNF703Q9H7S9 590 aaPredicted RBP16.63■□□□□ 0.25
COL9A3-214ENST00000490398 FOLH1BQ9HBA9 442 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 SSU72Q9NP77 194 aaKnown RBP16.63■□□□□ 0.25
COL9A3-214ENST00000490398 ZFP64Q9NPA5 681 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 GIMAP4Q9NUV9 329 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 CNIH4Q9P003 139 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 MEMO1Q9Y316 297 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 MYO7BQ6PIF6 2116 aa16.63■□□□□ 0.25
COL9A3-214ENST00000490398 C2orf72A6NCS6 295 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 ACOT7O00154 380 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 PLOD3O60568 738 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 PEX11AO75192 247 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 UGT2B11O75310 529 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 PPM1BO75688 479 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 CHEK2O96017 543 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 IGHG3P01860 377 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 TUBBP07437 444 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 NEFHP12036 1026 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 BCKDHAP12694 445 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 ENDOUP21128 410 aaKnown RBP16.62■□□□□ 0.25
COL9A3-214ENST00000490398 DRD5P21918 477 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 GRNP28799 593 aaKnown RBP16.62■□□□□ 0.25
COL9A3-214ENST00000490398 MPIP34949 423 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 SERPINB5P36952 375 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 PTGDSP41222 190 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 CASP3P42574 277 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 PPICP45877 212 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 LRIG3Q6UXM1 1119 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 IKBIPQ70UQ0 350 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 TRILQ7L0X0 811 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 ZNF551Q7Z340 670 aaPredicted RBP16.62■□□□□ 0.25
COL9A3-214ENST00000490398 WDR53Q7Z5U6 358 aaPredicted RBP16.62■□□□□ 0.25
COL9A3-214ENST00000490398 MRGPRGQ86SM5 289 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 DND1Q8IYX4 353 aaKnown RBP16.62■□□□□ 0.25
COL9A3-214ENST00000490398 MARVELD2Q8N4S9 558 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 OR4N2Q8NGD1 307 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms