RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 POLR3HQ9Y535 204 aaPredicted RBP8.4□□□□□ -1.06
HDAC6-232ENST00000489053 ABCA12Q86UK0 2595 aa8.4□□□□□ -1.07
HDAC6-232ENST00000489053 TACC2O95359 2948 aa8.4□□□□□ -1.07
HDAC6-232ENST00000489053 A0A1W2PS29 197 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 ANKRD33BA6NCL7 494 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 TMEM114B3SHH9 223 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 AQP7O14520 342 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 UBFD1O14562 309 aaKnown RBP8.39□□□□□ -1.07
HDAC6-232ENST00000489053 SUSD5O60279 629 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 GLSO94925 669 aaPredicted RBP8.39□□□□□ -1.07
HDAC6-232ENST00000489053 SLITRK5O94991 958 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 NADKO95544 446 aaPredicted RBP8.39□□□□□ -1.07
HDAC6-232ENST00000489053 JUNP05412 331 aaKnown RBP8.39□□□□□ -1.07
HDAC6-232ENST00000489053 NAGAP17050 411 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 GPX3P22352 226 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 ELAVL4P26378 380 aaKnown RBP8.39□□□□□ -1.07
HDAC6-232ENST00000489053 ACVR2AP27037 513 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 TRPC1P48995 793 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 CLK3P49761 638 aaKnown RBP8.39□□□□□ -1.07
HDAC6-232ENST00000489053 FOXA1P55317 472 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 RPL38P63173 70 aaKnown RBP8.39□□□□□ -1.07
HDAC6-232ENST00000489053 LTB4RQ15722 352 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 PRICKLE4Q2TBC4 344 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 GALNTL6Q49A17 601 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 SH2D4BQ5SQS7 431 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 NOXRED1Q6NXP6 359 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 WDR93Q6P2C0 686 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 GALNT18Q6P9A2 607 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 B3GNT6Q6ZMB0 384 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 TRILQ7L0X0 811 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 NUP54Q7Z3B4 507 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 CROCCP2Q86T23 111 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 TICAM1Q8IUC6 712 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 ZNF615Q8N8J6 731 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 ZFP28Q8NHY6 868 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 AGR3Q8TD06 166 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 AENQ8WTP8 325 aaKnown RBP8.39□□□□□ -1.07
HDAC6-232ENST00000489053 CAVIN3Q969G5 261 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 OMA1Q96E52 524 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 CNRIP1Q96F85 164 aaPredicted RBP8.39□□□□□ -1.07
HDAC6-232ENST00000489053 COL21A1Q96P44 957 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 PHF12Q96QT6 1004 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 NXF5Q9H1B4 397 aaKnown RBP8.39□□□□□ -1.07
HDAC6-232ENST00000489053 C12orf65Q9H3J6 166 aaKnown RBP8.39□□□□□ -1.07
HDAC6-232ENST00000489053 MYNNQ9NPC7 610 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 QPCTLQ9NXS2 382 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 HEY2Q9UBP5 337 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 LGALS13Q9UHV8 139 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 MRTO4Q9UKD2 239 aaKnown RBP8.39□□□□□ -1.07
HDAC6-232ENST00000489053 CES1P1Q9UKY3 287 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 CHCHD2Q9Y6H1 151 aaPredicted RBP8.39□□□□□ -1.07
HDAC6-232ENST00000489053 ZGRF1Q86YA3 2104 aa8.39□□□□□ -1.07
HDAC6-232ENST00000489053 SERTM1A2A2V5 107 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 PRAMEF25A6NGN4 478 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 FRG2CA6NGY1 282 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 FAM90A27PA6NNH2 459 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 ESPNB1AK53 854 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 GNB5O14775 395 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 PDPK1O15530 556 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 CTIFO43310 598 aaKnown RBP8.38□□□□□ -1.07
HDAC6-232ENST00000489053 ZNF500O60304 480 aaPredicted RBP8.38□□□□□ -1.07
HDAC6-232ENST00000489053 NPHS1O60500 1241 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 ZNF354AO60765 605 aaPredicted RBP8.38□□□□□ -1.07
HDAC6-232ENST00000489053 ABCB7O75027 752 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 WDR1O75083 606 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 ERN1O75460 977 aaKnown RBP8.38□□□□□ -1.07
HDAC6-232ENST00000489053 WISP2O76076 250 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 IGHG3P01860 377 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 CLPSP04118 112 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 SNRPB2P08579 225 aaKnown RBP8.38□□□□□ -1.07
HDAC6-232ENST00000489053 HOXD4P09016 255 aaPredicted RBP8.38□□□□□ -1.07
HDAC6-232ENST00000489053 GABRA1P14867 456 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 DRD5P21918 477 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 CHRNB4P30926 498 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 PTGER4P35408 488 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 SERPINB5P36952 375 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 HPCAL1P37235 193 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 PPICP45877 212 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 ASMTP46597 345 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 RFX3P48380 749 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 PSMD4P55036 377 aaKnown RBP8.38□□□□□ -1.07
HDAC6-232ENST00000489053 RAE1P78406 368 aaKnown RBP8.38□□□□□ -1.07
HDAC6-232ENST00000489053 ADORA2A-AS1P86434 159 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 PMPCAQ10713 525 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 EFR3AQ14156 821 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 PCLAFQ15004 111 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 ZNF630Q2M218 657 aaPredicted RBP8.38□□□□□ -1.07
HDAC6-232ENST00000489053 GXYLT1Q4G148 440 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 TRMT12Q53H54 448 aaKnown RBP8.38□□□□□ -1.07
HDAC6-232ENST00000489053 ZNF628Q5EBL2 1059 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 SLC30A6Q6NXT4 461 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 ANGPTL8Q6UXH0 198 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 LARP4Q71RC2 724 aaKnown RBP eCLIP8.38□□□□□ -1.07
HDAC6-232ENST00000489053 TRIM46Q7Z4K8 759 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 TRABD2AQ86V40 505 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 SLC44A2Q8IWA5 706 aaPredicted RBP8.38□□□□□ -1.07
HDAC6-232ENST00000489053 CLYBLQ8N0X4 340 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 ZNF441Q8N8Z8 693 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 BANPQ8N9N5 519 aa8.38□□□□□ -1.07
HDAC6-232ENST00000489053 OR1J4Q8NGS1 313 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms