RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 COX8CQ7Z4L0 72 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 RBM23Q86U06 439 aaKnown RBP3.59□□□□□ -1.83
PTCD3-216ENST00000487043 PIGZQ86VD9 579 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 FAM228AQ86W67 206 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 WDR49Q8IV35 697 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 STHQ8IWL8 128 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 ELMOD2Q8IZ81 293 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 KDM8Q8N371 416 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 FBXW8Q8N3Y1 598 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 SLC37A3Q8NCC5 494 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 FBXL13Q8NEE6 735 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 CCDC112Q8NEF3 446 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 OR4A16Q8NH70 328 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 U2AF1L4Q8WU68 220 aaKnown RBP3.59□□□□□ -1.83
PTCD3-216ENST00000487043 SEPT8Q92599 483 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 NXPE2Q96DL1 559 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 CPB2Q96IY4 423 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 C16orf45Q96MC5 204 aaPredicted RBP3.59□□□□□ -1.83
PTCD3-216ENST00000487043 NSMCE2Q96MF7 247 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 NEDD4LQ96PU5 975 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 PANX2Q96RD6 677 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 TSPAN18Q96SJ8 248 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 NTMT1Q9BV86 223 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 CCDC94Q9BW85 323 aaPredicted RBP3.59□□□□□ -1.83
PTCD3-216ENST00000487043 TRPV6Q9H1D0 765 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 GANQ9H2C0 597 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 MTIF3Q9H2K0 278 aaKnown RBP3.59□□□□□ -1.83
PTCD3-216ENST00000487043 HIPK2Q9H2X6 1198 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 SIX2Q9NPC8 291 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 INTS10Q9NVR2 710 aaKnown RBP3.59□□□□□ -1.83
PTCD3-216ENST00000487043 RAB20Q9NX57 234 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 AIPL1Q9NZN9 384 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 GCNT4Q9P109 453 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 TRIM10Q9UDY6 481 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 KCNN3Q9UGI6 736 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 IL36AQ9UHA7 158 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 DNAJC12Q9UKB3 198 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 CLCA3PQ9Y6N3 262 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 MROH7Q68CQ1 1323 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 FRMPD3Q5JV73 1810 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 PCNTO95613 3336 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 SLC28A1O00337 649 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 CHUKO15111 745 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 GLRA3O75311 464 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 PTBP3O95758 552 aaKnown RBP3.58□□□□□ -1.84
PTCD3-216ENST00000487043 GUCA1CO95843 209 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 ASS1P00966 412 aaKnown RBP3.58□□□□□ -1.84
PTCD3-216ENST00000487043 NGFP01138 241 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 TNNC2P02585 160 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 CCDC172P0C7W6 258 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 CXCL8P10145 99 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 B4GALT1P15291 398 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 AMD1P17707 334 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 RBMS1P29558 406 aaKnown RBP3.58□□□□□ -1.84
PTCD3-216ENST00000487043 CD52P31358 61 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 DCTP40126 519 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 PITPNBP48739 271 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 NANOS2P60321 138 aaKnown RBP3.58□□□□□ -1.84
PTCD3-216ENST00000487043 HTD2P86397 168 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 KEAP1Q14145 624 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 ZBTB6Q15916 424 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 SGSM1Q2NKQ1 1148 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 XKR4Q5GH76 650 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 WDR38Q5JTN6 314 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 NEK5Q6P3R8 708 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 WDR59Q6PJI9 974 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 TMEM207Q6UWW9 146 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 ALKAL1Q6UXT8 129 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 C9orf139Q6ZV77 190 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 TAF8Q7Z7C8 310 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 KIRREL3Q8IZU9 778 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 CNPY4Q8N129 248 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 CIARTQ8N365 385 aaPredicted RBP3.58□□□□□ -1.84
PTCD3-216ENST00000487043 OR5B17Q8NGF7 314 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 OR4C3Q8NH37 302 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 SPATA18Q8TC71 538 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 FCAMRQ8WWV6 532 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 TMEM186Q96B77 213 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 ANKRD36BP1Q96IX9 119 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 LYZL4Q96KX0 146 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 CHP1Q99653 195 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 PIGQQ9BRB3 760 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 TRIM6Q9C030 488 aaPredicted RBP3.58□□□□□ -1.84
PTCD3-216ENST00000487043 WWTR1Q9GZV5 400 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 TMEM245Q9H330 911 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 EGLN3Q9H6Z9 239 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 LIN28AQ9H9Z2 209 aaKnown RBP3.58□□□□□ -1.84
PTCD3-216ENST00000487043 UBE2TQ9NPD8 197 aaPredicted RBP3.58□□□□□ -1.84
PTCD3-216ENST00000487043 PIGVQ9NUD9 493 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 INTS9Q9NV88 658 aaKnown RBP3.58□□□□□ -1.84
PTCD3-216ENST00000487043 TBC1D13Q9NVG8 400 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 ZNHIT6Q9NWK9 470 aaKnown RBP3.58□□□□□ -1.84
PTCD3-216ENST00000487043 TAS2R3Q9NYW6 316 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 FLRT3Q9NZU0 649 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.58□□□□□ -1.84
PTCD3-216ENST00000487043 EPS15L1Q9UBC2 864 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 SH3BGRL2Q9UJC5 107 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 DNPEPQ9ULA0 475 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 C2CD2Q9Y426 696 aa3.58□□□□□ -1.84
PTCD3-216ENST00000487043 BZW2Q9Y6E2 419 aaKnown RBP3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms