RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 CCDC36Q8IYA8 594 aa4.79□□□□□ -1.64
VPS50-212ENST00000476413 NFAM1Q8NET5 270 aaPredicted RBP4.79□□□□□ -1.64
VPS50-212ENST00000476413 ZNF689Q96CS4 500 aaPredicted RBP4.79□□□□□ -1.64
VPS50-212ENST00000476413 RAB3CQ96E17 227 aa4.79□□□□□ -1.64
VPS50-212ENST00000476413 TESK2Q96S53 571 aa4.79□□□□□ -1.64
VPS50-212ENST00000476413 C19orf43Q9BQ61 176 aa4.79□□□□□ -1.64
VPS50-212ENST00000476413 CHCHD5Q9BSY4 110 aa4.79□□□□□ -1.64
VPS50-212ENST00000476413 CABLES2Q9BTV7 478 aa4.79□□□□□ -1.64
VPS50-212ENST00000476413 APOOQ9BUR5 198 aa4.79□□□□□ -1.64
VPS50-212ENST00000476413 RBM24Q9BX46 236 aaKnown RBP4.79□□□□□ -1.64
VPS50-212ENST00000476413 LRRCC1Q9C099 1032 aa4.79□□□□□ -1.64
VPS50-212ENST00000476413 DPH5Q9H2P9 285 aa4.79□□□□□ -1.64
VPS50-212ENST00000476413 ADGRL4Q9HBW9 690 aa4.79□□□□□ -1.64
VPS50-212ENST00000476413 SLC35D1Q9NTN3 355 aa4.79□□□□□ -1.64
VPS50-212ENST00000476413 FZR1Q9UM11 496 aa4.79□□□□□ -1.64
VPS50-212ENST00000476413 A0A1B0GUL7 405 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 TEX48A0A1B0GUV7 120 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 FBLL1A6NHQ2 334 aaKnown RBP4.78□□□□□ -1.64
VPS50-212ENST00000476413 RPL37AP8A6NKH3 93 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 ANKRD30BLA7E2S9 258 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 H0YL77 283 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.78□□□□□ -1.64
VPS50-212ENST00000476413 PDLIM1O00151 329 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 CLDN3O15551 220 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 GOT2P00505 430 aaKnown RBP4.78□□□□□ -1.64
VPS50-212ENST00000476413 KRT6BP04259 564 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 FCGR3AP08637 254 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 CYP2F1P24903 491 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 CAPGP40121 348 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 KRT6CP48668 564 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 RIDAP52758 137 aaKnown RBP4.78□□□□□ -1.64
VPS50-212ENST00000476413 VCPP55072 806 aaKnown RBP4.78□□□□□ -1.64
VPS50-212ENST00000476413 HERVK_113P63132 956 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 ERVK-8P63133 956 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 PAX8Q06710 450 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 LEG1Q6P5S2 330 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 RFWD3Q6PCD5 774 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 ZNF562Q6V9R5 426 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 MISPQ8IVT2 679 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 ABHD12Q8N2K0 398 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 SUMF1Q8NBK3 374 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 LHX4Q969G2 390 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 VGLL1Q99990 258 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 ERVK-6Q9BXR3 956 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 MRPL13Q9BYD1 178 aaKnown RBP4.78□□□□□ -1.64
VPS50-212ENST00000476413 SH3BGRL2Q9UJC5 107 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 AUP1Q9Y679 476 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 AP1M2Q9Y6Q5 423 aa4.78□□□□□ -1.64
VPS50-212ENST00000476413 CFLARO15519 480 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 CA3P07451 260 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 TRPC1P48995 793 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 CSRP3P50461 194 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 ERVK11-1P61568 191 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 PPIAP62937 165 aaKnown RBP4.77□□□□□ -1.65
VPS50-212ENST00000476413 TRA2BP62995 288 aaKnown RBP4.77□□□□□ -1.65
VPS50-212ENST00000476413 ACY1Q03154 408 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 ZP4Q12836 540 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 C17orf58Q2M2W7 97 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 FAM182AQ5T1J6 154 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 SEL1L2Q5TEA6 688 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 TAF3Q5VWG9 929 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 GALNT17Q6IS24 598 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 SLC39A4Q6P5W5 647 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 FAM43BQ6ZT52 329 aaPredicted RBP4.77□□□□□ -1.65
VPS50-212ENST00000476413 ZNF440Q8IYI8 595 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 SYAP1Q96A49 352 aaPredicted RBP4.77□□□□□ -1.65
VPS50-212ENST00000476413 ADIPOR1Q96A54 375 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 TTYH2Q9BSA4 534 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 JPT2Q9H910 190 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 GNB4Q9HAV0 340 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 FAM114A2Q9NRY5 505 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 GTSE1Q9NYZ3 720 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 SEC14L4Q9UDX3 406 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 MLXQ9UH92 298 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 MGAT4AQ9UM21 535 aa4.77□□□□□ -1.65
VPS50-212ENST00000476413 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.77□□□□□ -1.65
VPS50-212ENST00000476413 K7ERI5 159 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 EI24O14681 340 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 ALOX15BO15296 676 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 PI15O43692 258 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 RNF224P0DH78 156 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 PAICSP22234 425 aaKnown RBP4.76□□□□□ -1.65
VPS50-212ENST00000476413 POU3F4P49335 361 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 MRPS6P82932 125 aaKnown RBP4.76□□□□□ -1.65
VPS50-212ENST00000476413 CDKN3Q16667 212 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 SNAI3Q3KNW1 292 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 HSP90AA5PQ58FG0 334 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 DMKNQ6E0U4 476 aaPredicted RBP4.76□□□□□ -1.65
VPS50-212ENST00000476413 AFTPHQ6ULP2 937 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 REG3GQ6UW15 175 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 LHFPL4Q7Z7J7 247 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 CATSPER3Q86XQ3 398 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 GCNT2Q8N0V5 402 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 C4orf32Q8N8J7 132 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 DTNBP1Q96EV8 351 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 RBM4BQ9BQ04 359 aaKnown RBP4.76□□□□□ -1.65
VPS50-212ENST00000476413 TRIM51Q9BSJ1 452 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 FICDQ9BVA6 458 aa4.76□□□□□ -1.65
VPS50-212ENST00000476413 KAT8Q9H7Z6 458 aaKnown RBP4.76□□□□□ -1.65
VPS50-212ENST00000476413 TRPV5Q9NQA5 729 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms