RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 RFXAPO00287 272 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 PROM1O43490 865 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 CSO75390 466 aaKnown RBP8.41□□□□□ -1.06
SYNE1-217ENST00000466159 SLITRK5O94991 958 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 CSNK2A2P19784 350 aaPredicted RBP8.41□□□□□ -1.06
SYNE1-217ENST00000466159 CMPK1P30085 196 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 CSTF2P33240 577 aaKnown RBP eCLIP8.41□□□□□ -1.06
SYNE1-217ENST00000466159 SEPHS1P49903 392 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 BTN3A2P78410 334 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 ABATP80404 500 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 GINS1Q14691 196 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 LTB4RQ15722 352 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 MFSD4BQ5TF39 518 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 RD3Q7Z3Z2 195 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 LSRQ86X29 649 aaPredicted RBP8.41□□□□□ -1.06
SYNE1-217ENST00000466159 LYSMD2Q8IV50 215 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 PARP16Q8N5Y8 322 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 FAM83FQ8NEG4 500 aaPredicted RBP8.41□□□□□ -1.06
SYNE1-217ENST00000466159 KAT2AQ92830 837 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 TMEM80Q96HE8 168 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 OR7D2Q96RA2 312 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 SPATA5L1Q9BVQ7 753 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 TSSK6Q9BXA6 273 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 C6orf106Q9H6K1 298 aaPredicted RBP8.41□□□□□ -1.06
SYNE1-217ENST00000466159 CCDC59Q9P031 241 aaKnown RBP8.41□□□□□ -1.06
SYNE1-217ENST00000466159 GPR55Q9Y2T6 319 aaPredicted RBP8.41□□□□□ -1.06
SYNE1-217ENST00000466159 A0A0G2JPF8 293 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 PRSS38A1L453 326 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 HNRNPCL2B2RXH8 293 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 HNRNPCL3B7ZW38 293 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 H0Y8X5 98 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 TAF4O00268 1085 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 WWP2O00308 870 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 BTN3A3O00478 584 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 GUCY1B2O75343 617 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 ATP6V1G1O75348 118 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 SCG5P05408 212 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 FHP07954 510 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 HBQ1P09105 142 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 HNRNPCL4P0DMR1 293 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 GTF2E2P29084 291 aaKnown RBP8.41□□□□□ -1.06
SYNE1-217ENST00000466159 S100A5P33763 92 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 MPIP34949 423 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 GIPRP48546 466 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 RHAGQ02094 409 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 CHRNEQ04844 493 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 NCF4Q15080 339 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 SPHARQ15513 63 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 TJAP1Q5JTD0 557 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 STEAP3Q658P3 488 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 ZNF425Q6IV72 752 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 BHLHB9Q6PI77 547 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 AMIGO1Q86WK6 493 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 VRK2Q86Y07 508 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 MFSD9Q8NBP5 474 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 MINDY2Q8NBR6 621 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 NUP43Q8NFH3 380 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 CCL4L1Q8NHW4 92 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 SFXN5Q8TD22 340 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 LCN9Q8WX39 176 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 ELP4Q96EB1 424 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 PRRC1Q96M27 445 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 ZNF681Q96N22 645 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 CNPPD1Q9BV87 410 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 SARGQ9BW04 601 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 PLA2G12AQ9BZM1 189 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 MIR1-1HGQ9H1L0 117 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 SLC38A1Q9H2H9 487 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 EXOSC4Q9NPD3 245 aaKnown RBP8.41□□□□□ -1.06
SYNE1-217ENST00000466159 RPL36Q9Y3U8 105 aaKnown RBP8.41□□□□□ -1.06
SYNE1-217ENST00000466159 A3GALT2U3KPV4 340 aa8.41□□□□□ -1.06
SYNE1-217ENST00000466159 A0A087WUU8 490 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 EMC8O43402 210 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 CHRM5P08912 532 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-217ENST00000466159 COL9A1P20849 921 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 MAGP20916 626 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 PCYT1AP49585 367 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 HOXC5Q00444 222 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 ALDH6A1Q02252 535 aaKnown RBP8.4□□□□□ -1.06
SYNE1-217ENST00000466159 OCLNQ16625 522 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 SYT14P1Q58G82 188 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 ZNF311Q5JNZ3 666 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 MEDAGQ5VYS4 303 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 C1orf94Q6P1W5 598 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 VN1R4Q7Z5H5 301 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 C11orf74Q86VG3 221 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 KIF18BQ86Y91 864 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 OR56A1Q8NGH5 318 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 LRR1Q96L50 414 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 KCNS3Q9BQ31 491 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 EGLN3Q9H6Z9 239 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 KIR3DX1Q9H7L2 352 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 POLMQ9NP87 494 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-217ENST00000466159 CD93Q9NPY3 652 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 DZANK1Q9NVP4 752 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 ZNF229Q9UJW7 825 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 CAB39Q9Y376 341 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-217ENST00000466159 CHST2Q9Y4C5 530 aa8.4□□□□□ -1.06
SYNE1-217ENST00000466159 CTDSP2O14595 271 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 FCMRO60667 390 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms