RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, human

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-204	ENST00000445503	C1QTNF3-AMACR	E9PGA6	284 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	AKAP8	O43823	692 aa	Known RBP	11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	CSNK2A2	P19784	350 aa	Predicted RBP	11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	PCDH1	Q08174	1060 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	MLLT11	Q13015	90 aa	Predicted RBP	11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	TATDN3	Q17R31	274 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	XKRX	Q6PP77	449 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	C10orf53	Q8N6V4	93 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	PIGK	Q92643	395 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	OR2A14	Q96R47	310 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	KRCC1	Q9NPI7	259 aa	Predicted RBP	11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	CXXC1	Q9P0U4	656 aa	Predicted RBP	11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	IRGM	A1A4Y4	181 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	FOXE1	O00358	373 aa	Predicted RBP	11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	PGRMC2	O15173	223 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	CHST10	O43529	356 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	REM1	O75628	298 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	ADH1C	P00326	375 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	GSTM3	P21266	225 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	PSPH	P78330	225 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	DBP	Q10586	325 aa	Predicted RBP	11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	GPR19	Q15760	415 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	SLX4IP	Q5VYV7	408 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	GDPGP1	Q6ZNW5	385 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	RNF165	Q6ZSG1	346 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	LSR	Q86X29	649 aa	Predicted RBP	11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	SAMD12	Q8N8I0	201 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	OR10G6	Q8NH81	332 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	DTD2	Q96FN9	168 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	MRPS30	Q9NP92	439 aa	Known RBP	11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	STOML2	Q9UJZ1	356 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	PCDHGB2	Q9Y5G2	931 aa		11.22	□□□□□ -0.61
MSH6-204	ENST00000445503	PRAMEF25	A6NGN4	478 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	OR2B3	O76000	313 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	DHFR	P00374	187 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	CTSL	P07711	333 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	CCR2	P41597	374 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	BTN3A2	P78410	334 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	LRRC32	Q14392	662 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	DHCR24	Q15392	516 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	TCEAL5	Q5H9L2	206 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	TOR1AIP1	Q5JTV8	583 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	CNKSR3	Q6P9H4	555 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	DPPA4	Q7L190	304 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	NRM	Q8IXM6	262 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	YAF2	Q8IY57	180 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	YIPF7	Q8N8F6	280 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	UCN3	Q969E3	161 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	TM4SF18	Q96CE8	201 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	ZNF582	Q96NG8	517 aa	Predicted RBP	11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	IFT27	Q9BW83	186 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	SLC35C2	Q9NQQ7	365 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	ING4	Q9UNL4	249 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503		J3QLW9	94 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	OR5F1	O95221	314 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	HBQ1	P09105	142 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	ZNF19	P17023	458 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	ST3GAL3	Q11203	375 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	MPEG1	Q2M385	716 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	DEFB115	Q30KQ5	88 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	MTFR2	Q6P444	385 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	PSRC1	Q6PGN9	363 aa	Predicted RBP	11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	ZER1	Q7Z7L7	766 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	ADIPOR2	Q86V24	386 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	PXYLP1	Q8TE99	480 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	ARSG	Q96EG1	525 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503	CREBZF	Q9NS37	354 aa		11.21	□□□□□ -0.61
MSH6-204	ENST00000445503		A0A075B6Q4	140 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	HYKK	A2RU49	373 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	IGLON5	A6NGN9	336 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	AGAP14	A8MT82	685 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	SLC31A1	O15431	190 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	LAMP2	P13473	410 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	DCDC1	P59894	354 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	TRAM2	Q15035	370 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	NDUFA9	Q16795	377 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	SYT14P1	Q58G82	188 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	PIP5KL1	Q5T9C9	394 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	FCRLB	Q6BAA4	426 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	VASH1	Q7L8A9	365 aa	Predicted RBP	11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	ZNF438	Q7Z4V0	828 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	TSEN54	Q7Z6J9	526 aa	Known RBP	11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	VRK2	Q86Y07	508 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	PEX5L	Q8IYB4	626 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	NANOGP1	Q8N7R0	232 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	GDPD1	Q8N9F7	314 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	SLAIN1	Q8ND83	568 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	VN1R2	Q8NFZ6	395 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	SETD6	Q8TBK2	473 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	POF1B	Q8WVV4	589 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	PDXP	Q96GD0	296 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	ENAM	Q9NRM1	1142 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	FTSJ1	Q9UET6	329 aa		11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	EXO1	Q9UQ84	846 aa	Known RBP	11.21	□□□□□ -0.62
MSH6-204	ENST00000445503	EEF1E1	O43324	174 aa	Known RBP	11.2	□□□□□ -0.62
MSH6-204	ENST00000445503	NOS1AP	O75052	506 aa	Predicted RBP	11.2	□□□□□ -0.62
MSH6-204	ENST00000445503	MPI	P34949	423 aa		11.2	□□□□□ -0.62
MSH6-204	ENST00000445503	ACVR1B	P36896	505 aa		11.2	□□□□□ -0.62
MSH6-204	ENST00000445503	CTBP2	P56545	445 aa		11.2	□□□□□ -0.62
MSH6-204	ENST00000445503	GNG2	P59768	71 aa		11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms