RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 C7orf34Q96L11 122 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 HHIPQ96QV1 700 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 TP63Q9H3D4 680 aaPredicted RBP16.33■□□□□ 0.21
PTPRF-209ENST00000438120 ZNF850A8MQ14 1090 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 TIMP1P01033 207 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 P04436 131 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 CFL1P23528 166 aaKnown RBP16.33■□□□□ 0.21
PTPRF-209ENST00000438120 RIDAP52758 137 aaKnown RBP16.33■□□□□ 0.21
PTPRF-209ENST00000438120 ACTC1P68032 377 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 ACTA1P68133 377 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 SPHARQ15513 63 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 AAK1Q2M2I8 961 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 TBRG1Q3YBR2 411 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 PM20D1Q6GTS8 502 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 TEX26Q8N6G2 289 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 MDGA1Q8NFP4 955 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 ERVK13-1Q9NX77 482 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 RPH3AQ9Y2J0 694 aaPredicted RBP16.33■□□□□ 0.21
PTPRF-209ENST00000438120 ZNF888P0CJ79 500 aaPredicted RBP16.33■□□□□ 0.2
PTPRF-209ENST00000438120 ANXA3P12429 323 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 GGT1P19440 569 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 IL4RP24394 825 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 HSD11B2P80365 405 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 ZNF791Q3KP31 576 aaPredicted RBP16.33■□□□□ 0.2
PTPRF-209ENST00000438120 CCDC58Q4VC31 144 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 RPL13AP3Q6NVV1 102 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 STOML3Q8TAV4 291 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 CPEB1Q9BZB8 566 aaKnown RBP16.33■□□□□ 0.2
PTPRF-209ENST00000438120 CLCA1A8K7I4 914 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 MAOBP27338 520 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 DEFB103AP81534 67 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 GRM7Q14831 915 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 C17orf99Q6UX52 265 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 GPR137CQ8N3F9 429 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 OR5L2Q8NGL0 311 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 OR14L1PQ8NHC6 308 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 HS6ST2Q96MM7 605 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 C8orf33Q9H7E9 229 aaPredicted RBP16.33■□□□□ 0.2
PTPRF-209ENST00000438120 TMEM184CQ9NVA4 438 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 SMCO3A2RU48 225 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 RAD1O60671 282 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 CLCN2P51788 898 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 C6orf132Q5T0Z8 1188 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 UNC5DQ6UXZ4 953 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 OR9A2Q8NGT5 310 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 SMIM14Q96QK8 99 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 UHRF1Q96T88 793 aaPredicted RBP16.33■□□□□ 0.2
PTPRF-209ENST00000438120 MMP27Q9H306 513 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 SMOXQ9NWM0 555 aa16.33■□□□□ 0.2
PTPRF-209ENST00000438120 M0R3H8 397 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 OR52N2Q8NGI0 321 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 SLC41A3Q96GZ6 507 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 SLC12A9Q9BXP2 914 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 OR2S2Q9NQN1 319 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 YARS2Q9Y2Z4 477 aaKnown RBP16.32■□□□□ 0.2
PTPRF-209ENST00000438120 NPIPA5A0A0B4J1W7 369 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 NPIPA7E9PJI5 369 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 YY2O15391 372 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 NPIPA8P0DM63 369 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 AMY2BP19961 511 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 RABIFP47224 123 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 LDLRAD1Q5T700 205 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 LIPIQ6XZB0 460 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 GPR26Q8NDV2 337 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 FRS2Q8WU20 508 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 ZNF559Q9BR84 538 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 NAA11Q9BSU3 229 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-209ENST00000438120 TMEM9Q9P0T7 183 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 GPR39O43194 453 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 SSX5O60225 188 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 PPP1R3DO95685 299 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 SFTPDP35247 375 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 PTGS2P35354 604 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 RANBP10Q6VN20 620 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 HSD11B1LQ7Z5J1 315 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 SLC5A8Q8N695 610 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 MYLIPQ8WY64 445 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 ZNF442Q9H7R0 627 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 SUSD2Q9UGT4 822 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 G3V2L1 256 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 H3BML4 177 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 APBB3O95704 486 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 HPRP00739 348 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 P2RY2P41231 377 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 FOXK1P85037 733 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 TIGD4Q8IY51 512 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 CD200R1Q8TD46 325 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 L3HYPDHQ96EM0 354 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 ZFYVE21Q9BQ24 234 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 LMAN1LQ9HAT1 526 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 HCSTQ9UBK5 93 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 REV1Q9UBZ9 1251 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 ZNF142P52746 1687 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-209ENST00000438120 SGK494L7N484 410 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 M0R129 80 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 FRS3O43559 492 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 RGS9O75916 674 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-209ENST00000438120 CNOT4O95628 575 aaKnown RBP16.32■□□□□ 0.2
PTPRF-209ENST00000438120 PROS1P07225 676 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 TUBG1P23258 451 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms