RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	OR56A1	Q8NGH5	318 aa		12.2	□□□□□ -0.46
SF1-206	ENST00000413725	C9orf43	Q8TAL5	461 aa	Predicted RBP	12.2	□□□□□ -0.46
SF1-206	ENST00000413725	SLC22A8	Q8TCC7	542 aa		12.2	□□□□□ -0.46
SF1-206	ENST00000413725	VPS33A	Q96AX1	596 aa		12.2	□□□□□ -0.46
SF1-206	ENST00000413725	ABHD17A	Q96GS6	310 aa		12.2	□□□□□ -0.46
SF1-206	ENST00000413725	MS4A4E	Q96PG1	132 aa		12.2	□□□□□ -0.46
SF1-206	ENST00000413725	PANX1	Q96RD7	426 aa		12.2	□□□□□ -0.46
SF1-206	ENST00000413725	NMUR2	Q9GZQ4	415 aa		12.2	□□□□□ -0.46
SF1-206	ENST00000413725	ANKRA2	Q9H9E1	313 aa		12.2	□□□□□ -0.46
SF1-206	ENST00000413725	SIRT3	Q9NTG7	399 aa	Predicted RBP	12.2	□□□□□ -0.46
SF1-206	ENST00000413725	ZCCHC3	Q9NUD5	404 aa	Known RBP	12.2	□□□□□ -0.46
SF1-206	ENST00000413725	STMN3	Q9NZ72	180 aa		12.2	□□□□□ -0.46
SF1-206	ENST00000413725	NTM	Q9P121	344 aa		12.2	□□□□□ -0.46
SF1-206	ENST00000413725	VPS4A	Q9UN37	437 aa		12.2	□□□□□ -0.46
SF1-206	ENST00000413725	LHX6	Q9UPM6	363 aa		12.2	□□□□□ -0.46
SF1-206	ENST00000413725	YARS2	Q9Y2Z4	477 aa	Known RBP	12.2	□□□□□ -0.46
SF1-206	ENST00000413725	HEMK1	Q9Y5R4	338 aa	Predicted RBP	12.2	□□□□□ -0.46
SF1-206	ENST00000413725	CAPN7	Q9Y6W3	813 aa		12.2	□□□□□ -0.46
SF1-206	ENST00000413725	ATRX	P46100	2492 aa		12.2	□□□□□ -0.46
SF1-206	ENST00000413725	KMT2B	Q9UMN6	2715 aa	Predicted RBP	12.19	□□□□□ -0.46
SF1-206	ENST00000413725	TTC36	A6NLP5	189 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	WWP2	O00308	870 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	CDK2AP1	O14519	115 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	RFXANK	O14593	260 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	ITGA10	O75578	1167 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	PSMG1	O95456	288 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	ANP32D	O95626	131 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	SNRPB2	P08579	225 aa	Known RBP	12.19	□□□□□ -0.46
SF1-206	ENST00000413725	CASR	P41180	1078 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	PRIM2	P49643	509 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	SSR4	P51571	173 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	PRKAG1	P54619	331 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	NRG3	P56975	720 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	KLF10	Q13118	480 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	DUSP8	Q13202	625 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	UBAP2L	Q14157	1087 aa	Known RBP	12.19	□□□□□ -0.46
SF1-206	ENST00000413725	ZNHIT3	Q15649	155 aa	Predicted RBP	12.19	□□□□□ -0.46
SF1-206	ENST00000413725	LACTB2	Q53H82	288 aa	Predicted RBP	12.19	□□□□□ -0.46
SF1-206	ENST00000413725	C6orf10	Q5SRN2	563 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	GK5	Q6ZS86	529 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	TAGAP	Q8N103	731 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	BEST3	Q8N1M1	668 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	SIMC1	Q8NDZ2	872 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	GOT1L1	Q8NHS2	421 aa	Predicted RBP	12.19	□□□□□ -0.46
SF1-206	ENST00000413725	TSPEAR	Q8WU66	669 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	TP53INP1	Q96A56	240 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	FAM120B	Q96EK7	910 aa	Known RBP	12.19	□□□□□ -0.46
SF1-206	ENST00000413725	WBP1	Q96G27	269 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	ITPA	Q9BY32	194 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	CXorf36	Q9H7Y0	433 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	FOLH1B	Q9HBA9	442 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	TP53TG5	Q9Y2B4	290 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	FREM3	P0C091	2139 aa		12.19	□□□□□ -0.46
SF1-206	ENST00000413725	NBEA	Q8NFP9	2946 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	FAM208B	Q5VWN6	2430 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	RNF103-CHMP3	A0A140T963	221 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725		A0A1W2PP18	115 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	ANGPT2	O15123	496 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	ACOX3	O15254	700 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	ERN1	O75460	977 aa	Known RBP	12.18	□□□□□ -0.46
SF1-206	ENST00000413725	OR2J2	O76002	312 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	KRT16	P08779	473 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	CAPN3	P20807	821 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	UQCRC2	P22695	453 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	CHI3L1	P36222	383 aa	Predicted RBP	12.18	□□□□□ -0.46
SF1-206	ENST00000413725	PPIC	P45877	212 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	TRPC1	P48995	793 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	NR0B1	P51843	470 aa	Known RBP	12.18	□□□□□ -0.46
SF1-206	ENST00000413725	PSPH	P78330	225 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	ARG2	P78540	354 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	TP53BP2	Q13625	1128 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	VPS26B	Q4G0F5	336 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	ZCCHC12	Q6PEW1	402 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	IGFL2	Q6UWQ7	119 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	MTDH	Q86UE4	582 aa	Known RBP	12.18	□□□□□ -0.46
SF1-206	ENST00000413725	ZADH2	Q8N4Q0	377 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	TMEM156	Q8N614	296 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	SLC15A4	Q8N697	577 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	CDRT4	Q8N9R6	151 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	ASB15	Q8WXK1	588 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	ADIPOR1	Q96A54	375 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	LCOR	Q96JN0	433 aa	Predicted RBP	12.18	□□□□□ -0.46
SF1-206	ENST00000413725	VSTM2L	Q96N03	204 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	BTBD9	Q96Q07	612 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	UBL7	Q96S82	380 aa	Predicted RBP	12.18	□□□□□ -0.46
SF1-206	ENST00000413725	NPAS2	Q99743	824 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	INPP5K	Q9BT40	448 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	RNF32	Q9H0A6	362 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	LIN28A	Q9H9Z2	209 aa	Known RBP	12.18	□□□□□ -0.46
SF1-206	ENST00000413725	EQTN	Q9NQ60	294 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	LEF1	Q9UJU2	399 aa	Predicted RBP	12.18	□□□□□ -0.46
SF1-206	ENST00000413725	FAF1	Q9UNN5	650 aa	Predicted RBP	12.18	□□□□□ -0.46
SF1-206	ENST00000413725	DTX4	Q9Y2E6	619 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	SVIL	O95425	2214 aa		12.18	□□□□□ -0.46
SF1-206	ENST00000413725	FRG2C	A6NGY1	282 aa		12.17	□□□□□ -0.46
SF1-206	ENST00000413725	TMEM200C	A6NKL6	621 aa		12.17	□□□□□ -0.46
SF1-206	ENST00000413725	CAPN14	A8MX76	684 aa		12.17	□□□□□ -0.46
SF1-206	ENST00000413725	NDUFAB1	O14561	156 aa		12.17	□□□□□ -0.46
SF1-206	ENST00000413725	MAN1A2	O60476	641 aa		12.17	□□□□□ -0.46
SF1-206	ENST00000413725	DPM1	O60762	260 aa		12.17	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms