RNA–Protein interactions for RNA: ENST00000375740.7

MSH5-202, Transcript of mutS homolog 5, humanhuman

TSL 1 (best) BASIC

Gene MSH5, Length 2,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-202ENST00000375740 OR2A14Q96R47 310 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 SIGLEC11Q96RL6 698 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 PHOX2BQ99453 314 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 KCNS3Q9BQ31 491 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 FAIM2Q9BWQ8 316 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 MMP28Q9H239 520 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 ANKHQ9HCJ1 492 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 CD93Q9NPY3 652 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 NUFIP1Q9UHK0 495 aaKnown RBP13.18□□□□□ -0.3
MSH5-202ENST00000375740 ASB4Q9Y574 426 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 SNRNP200O75643 2136 aaKnown RBP13.18□□□□□ -0.3
MSH5-202ENST00000375740 A0A1W2PR48 441 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 PRAMEF27A3QJZ7 478 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 MAN2B1O00754 1011 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 FFAR1O14842 300 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 MED26O95402 600 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 CBLP22681 906 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 AK4P27144 223 aaPredicted RBP13.18□□□□□ -0.3
MSH5-202ENST00000375740 PTGER1P34995 402 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 CTSKP43235 329 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 PXNP49023 591 aaPredicted RBP13.18□□□□□ -0.3
MSH5-202ENST00000375740 RAB30Q15771 203 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 SYPL1Q16563 259 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 ABHD17CQ6PCB6 329 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 P3H2Q8IVL5 708 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 OR8H2Q8N162 312 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 ACOT4Q8N9L9 421 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 IPCEF1Q8WWN9 437 aaPredicted RBP13.18□□□□□ -0.3
MSH5-202ENST00000375740 OR1E3Q8WZA6 343 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 GTPBP3Q969Y2 492 aaKnown RBP13.18□□□□□ -0.3
MSH5-202ENST00000375740 RIPOR3Q96MK2 946 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 OR51I1Q9H343 314 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 ZNF556Q9HAH1 456 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 CCNB1IP1Q9NPC3 277 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 TOR4AQ9NXH8 423 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 ATG4BQ9Y4P1 393 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 COLEC10Q9Y6Z7 277 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 UNC80Q8N2C7 3258 aa13.18□□□□□ -0.3
MSH5-202ENST00000375740 GOLGA4Q13439 2230 aaKnown RBP13.18□□□□□ -0.3
MSH5-202ENST00000375740 A8MVJ9 347 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 ANHXE9PGG2 379 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 H0Y8X5 98 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 SLC28A2O43868 658 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 ERAL1O75616 437 aaKnown RBP13.17□□□□□ -0.3
MSH5-202ENST00000375740 HIST1H1TP22492 207 aaPredicted RBP13.17□□□□□ -0.3
MSH5-202ENST00000375740 CMPK1P30085 196 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 AHRP35869 848 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 SLC19A1P41440 591 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 SLC15A1P46059 708 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 NCBP2P52298 156 aaKnown RBP eCLIP13.17□□□□□ -0.39e-7■■■■□ 23.4
MSH5-202ENST00000375740 DEFA1P59665 94 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 DEFA3P59666 94 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 CSNK2BP67870 215 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 ZNF517Q6ZMY9 492 aaPredicted RBP13.17□□□□□ -0.3
MSH5-202ENST00000375740 GLRX5Q86SX6 157 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 AMER2Q8N7J2 671 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 OR5D16Q8NGK9 328 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 XAGE5Q8WWM1 108 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 BBS4Q96RK4 519 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 COQ7Q99807 217 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 CHCHD6Q9BRQ6 235 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 NPAP1Q9NZP6 1156 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 MUTYHQ9UIF7 546 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 FBXW2Q9UKT8 454 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 NCKAP1Q9Y2A7 1128 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 TRBV23OR9-2A0A075B6M9 112 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 C12orf71A8MTZ7 269 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 CPNE3O75131 537 aaKnown RBP13.17□□□□□ -0.3
MSH5-202ENST00000375740 GASTP01350 101 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 ATP5A1P25705 553 aaKnown RBP13.17□□□□□ -0.3
MSH5-202ENST00000375740 IDH2P48735 452 aaKnown RBP13.17□□□□□ -0.3
MSH5-202ENST00000375740 RAB8AP61006 207 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 C19orf57Q0VDD7 668 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 TIGD6Q17RP2 521 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 ZNF750Q32MQ0 723 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 MTSS1LQ765P7 747 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 CYP4Z2PQ8N1L4 340 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 CCL4L1Q8NHW4 92 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 UTP15Q8TED0 518 aaKnown RBP13.17□□□□□ -0.3
MSH5-202ENST00000375740 LCN9Q8WX39 176 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 SLC35G5Q96KT7 338 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 KIR3DX1Q9H7L2 352 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 FBRSQ9HAH7 460 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 ZCCHC3Q9NUD5 404 aaKnown RBP13.17□□□□□ -0.3
MSH5-202ENST00000375740 ZNF226Q9NYT6 803 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 TRPC4Q9UBN4 977 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 APOBEC3BQ9UH17 382 aaKnown RBP13.17□□□□□ -0.3
MSH5-202ENST00000375740 HEBP2Q9Y5Z4 205 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 NINQ8N4C6 2090 aa13.17□□□□□ -0.3
MSH5-202ENST00000375740 MEIOCA2RUB1 952 aa13.16□□□□□ -0.3
MSH5-202ENST00000375740 LOC110117498-PIK3R3F6TDL0 507 aa13.16□□□□□ -0.3
MSH5-202ENST00000375740 MRPS14O60783 128 aaKnown RBP13.16□□□□□ -0.3
MSH5-202ENST00000375740 PDE9AO76083 593 aa13.16□□□□□ -0.3
MSH5-202ENST00000375740 ALPPL2P10696 532 aa13.16□□□□□ -0.3
MSH5-202ENST00000375740 PRKAG1P54619 331 aa13.16□□□□□ -0.3
MSH5-202ENST00000375740 CDONQ4KMG0 1287 aa13.16□□□□□ -0.3
MSH5-202ENST00000375740 C18orf63Q68DL7 685 aa13.16□□□□□ -0.3
MSH5-202ENST00000375740 MRM1Q6IN84 353 aaKnown RBP13.16□□□□□ -0.3
MSH5-202ENST00000375740 NOXA1Q86UR1 476 aa13.16□□□□□ -0.3
MSH5-202ENST00000375740 AMIGO1Q86WK6 493 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms