RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 ZC3HAV1Q7Z2W4 902 aaKnown RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 LRRTM4Q86VH4 590 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM200AQ86VY9 491 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM161BQ8NDZ6 487 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ACTL9Q8TC94 416 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 NSMAFQ92636 917 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 TSNAXQ99598 290 aaKnown RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 C1GALT1Q9NS00 363 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ROS1P08922 2347 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 CLCNKAP51800 687 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 HEATR6Q6AI08 1181 aaKnown RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ENPP6Q6UWR7 440 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 C11orf65Q8NCR3 313 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 OR9I1Q8NGQ6 314 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 DPH2Q9BQC3 489 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 DCP1AQ9NPI6 582 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 CREBBPQ92793 2442 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CLIC1O00299 241 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 DVL2O14641 736 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CRATP43155 626 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 LRIT3Q3SXY7 679 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ADGRG3Q86Y34 549 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 COL21A1Q96P44 957 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 BCO1Q9HAY6 547 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 DNAJC27Q9NZQ0 273 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 AGO2Q9UKV8 859 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PNPLA4P41247 253 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 GBX2P52951 348 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 VSX2P58304 361 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 OR2L8Q8NGY9 312 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SLC38A4Q969I6 547 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 TTLL2Q9BWV7 592 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SOCS2O14508 198 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ERAL1O75616 437 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CLDN9O95484 217 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 HK3P52790 923 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CYBRD1Q53TN4 286 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 LCN1P1Q5VSP4 162 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 C1orf122Q6ZSJ8 110 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CYP4Z2PQ8N1L4 340 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 IL12RB2Q99665 862 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 MAPKAP1Q9BPZ7 522 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 GALNT9Q9HCQ5 603 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 INPP5EQ9NRR6 644 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 NLE1Q9NVX2 485 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 OR5K4A6NMS3 321 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 J3QLW9 94 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 TRUB2O95900 331 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF19P17023 458 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 GRK4P32298 578 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 UBE2KP61086 200 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 AWAT2Q6E213 333 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 DNAAF1Q8NEP3 725 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ZMIZ2Q8NF64 920 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 OR56B4Q8NH76 319 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CENPIQ92674 756 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 DUSP22Q9NRW4 184 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SAMHD1Q9Y3Z3 626 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 LRP4O75096 1905 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ARGFXA6NJG6 315 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 EFCAB9A8MZ26 197 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 HTR1BP28222 390 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 MAPKAPK3Q16644 382 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 C18orf63Q68DL7 685 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 VSTM1Q6UX27 236 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RNF111Q6ZNA4 994 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SLC16A13Q7RTY0 426 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SYT3Q9BQG1 590 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 MFFQ9GZY8 342 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SLC6A20Q9NP91 592 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RNF181Q9P0P0 153 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CDK14O94921 469 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF35P13682 527 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CHI3L1P36222 383 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF543Q08ER8 600 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 RSU1Q15404 277 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SH2D5Q6ZV89 423 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CAMK1GQ96NX5 476 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 FUZQ9BT04 418 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 TAS2R3Q9NYW6 316 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PPT2Q9UMR5 302 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 PBX3P40426 434 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 ADCYAP1R1P41586 468 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 EFCAB12Q6NXP0 572 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 MMP21Q8N119 569 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 UBR7Q8N806 425 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SH3RF2Q8TEC5 729 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 NELFAQ9H3P2 528 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 GPRC5BQ9NZH0 403 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 FLRT1Q9NZU1 646 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 FKBPLQ9UIM3 349 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 IL1R2P27930 398 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SLC35G1Q2M3R5 365 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SMARCD3Q6STE5 483 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 COMMD7Q86VX2 200 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 CELF5Q8N6W0 485 aaKnown RBP3.37□□□□□ -1.87
SYNE1-201ENST00000341594 SNAPC3Q92966 411 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 DIRAS2Q96HU8 199 aa3.37□□□□□ -1.87
SYNE1-201ENST00000341594 OR2M4Q96R27 311 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms