RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 PRKYO43930 277 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 SULT1C4O75897 302 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 ADAP00813 363 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 SERPINB1P30740 379 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 EIF2DP41214 584 aaKnown RBP9.73□□□□□ -0.85
LIMA1-201ENST00000341247 TAS2R41P59536 307 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 SLC13A2Q13183 592 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 ENPP2Q13822 863 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 GINS1Q14691 196 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 TBC1D25Q3MII6 688 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 VN1R4Q7Z5H5 301 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 MFSD4AQ8N468 514 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 ELSPBP1Q96BH3 223 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 CNPPD1Q9BV87 410 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 WDR12Q9GZL7 423 aaKnown RBP9.73□□□□□ -0.85
LIMA1-201ENST00000341247 TPK1Q9H3S4 243 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 STARD5Q9NSY2 213 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 CLDND1Q9NY35 253 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 CARD8Q9Y2G2 431 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 CAB39Q9Y376 341 aaPredicted RBP9.73□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF780BQ9Y6R6 833 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 COLEC10Q9Y6Z7 277 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 FAAHO00519 579 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 P2RX6O15547 441 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 TBX1O43435 398 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 PRICKLE3O43900 615 aaPredicted RBP9.72□□□□□ -0.85
LIMA1-201ENST00000341247 F3P13726 295 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 DDX5P17844 614 aaKnown RBP9.72□□□□□ -0.85
LIMA1-201ENST00000341247 GTF2E2P29084 291 aaKnown RBP9.72□□□□□ -0.85
LIMA1-201ENST00000341247 CTHP32929 405 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF404Q494X3 552 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 TMEM35AQ53FP2 167 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 ACSM5Q6NUN0 579 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 SLC48A1Q6P1K1 146 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 FAM111BQ6SJ93 734 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 SLC16A11Q8NCK7 471 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 FCGR1BQ92637 280 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 TMEM203Q969S6 136 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 OTULINQ96BN8 352 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 RAB11FIP5Q9BXF6 653 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 PLA2G12AQ9BZM1 189 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 GIMAP4Q9NUV9 329 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 TDRD6O60522 2096 aaKnown RBP9.72□□□□□ -0.85
LIMA1-201ENST00000341247 LOC105369274A0A096LPK9 316 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 NPIPA5A0A0B4J1W7 369 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 LOC102723532A0A0G2JNH3 316 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 KRBA1A5PL33 1030 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 OR6C74A6NCV1 312 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 GPR89AB7ZAQ6 455 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 NPIPA7E9PJI5 369 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 ARHGAP33O14559 1287 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 KIAA0513O60268 411 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 GPR89BP0CG08 455 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 NPIPA8P0DM63 369 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 CPN2P22792 545 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 MPIP34949 423 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 TGM4P49221 684 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 PRSS41Q7RTY9 318 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 TRIM48Q8IWZ4 208 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 OR4N4Q8N0Y3 316 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 KIAA1958Q8N8K9 716 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 HMGB4Q8WW32 186 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 TSSK6Q9BXA6 273 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 TCEAL2Q9H3H9 227 aaPredicted RBP9.72□□□□□ -0.85
LIMA1-201ENST00000341247 FKBP14Q9NWM8 211 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 OSGIN1Q9UJX0 560 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 MGAT4BQ9UQ53 548 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 WBP11Q9Y2W2 641 aaKnown RBP9.72□□□□□ -0.85
LIMA1-201ENST00000341247 PROM1O43490 865 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 CTSVO60911 334 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 LDB3O75112 727 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 PDX1P52945 283 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 SRSF5Q13243 272 aaKnown RBP9.72□□□□□ -0.85
LIMA1-201ENST00000341247 SNAPC1Q16533 368 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 MLIPQ5VWP3 458 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 PLAG1Q6DJT9 500 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 CYP4Z2PQ8N1L4 340 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 CHPT1Q8WUD6 406 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 HTRA1Q92743 480 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 ELP4Q96EB1 424 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 BMFQ96LC9 184 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 MAN2C1Q9NTJ4 1040 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 TAS2R7Q9NYW3 318 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF229Q9UJW7 825 aa9.72□□□□□ -0.85
LIMA1-201ENST00000341247 EFCAB10A6NFE3 127 aa9.71□□□□□ -0.85
LIMA1-201ENST00000341247 DSCR3O14972 297 aa9.71□□□□□ -0.85
LIMA1-201ENST00000341247 TBX19O60806 448 aa9.71□□□□□ -0.85
LIMA1-201ENST00000341247 FHP07954 510 aa9.71□□□□□ -0.85
LIMA1-201ENST00000341247 NR2F6P10588 404 aa9.71□□□□□ -0.85
LIMA1-201ENST00000341247 PPM1FP49593 454 aaPredicted RBP9.71□□□□□ -0.85
LIMA1-201ENST00000341247 STXBP1P61764 594 aaKnown RBP9.71□□□□□ -0.85
LIMA1-201ENST00000341247 PRR5P85299 388 aa9.71□□□□□ -0.85
LIMA1-201ENST00000341247 MXD1Q05195 221 aa9.71□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF91Q05481 1191 aa9.71□□□□□ -0.85
LIMA1-201ENST00000341247 TGM3Q08188 693 aa9.71□□□□□ -0.85
LIMA1-201ENST00000341247 MRM1Q6IN84 353 aaKnown RBP9.71□□□□□ -0.85
LIMA1-201ENST00000341247 TMEM92Q6UXU6 159 aa9.71□□□□□ -0.85
LIMA1-201ENST00000341247 NATD1Q8N6N6 113 aa9.71□□□□□ -0.85
LIMA1-201ENST00000341247 MFSD9Q8NBP5 474 aa9.71□□□□□ -0.85
LIMA1-201ENST00000341247 OR7G2Q8NG99 324 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms